AL035665.1 (novel transcript) - Rat Genome Database

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Gene: AL035665.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL035665.1
Name: novel transcript
RGD ID: 16554519
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2040,696,499 - 40,698,616 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:176
Count of miRNA genes:174
Interacting mature miRNAs:176
Transcripts:ENST00000428495
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 1 3 5 2 2 1 1 1 6
Low 45 63 552 19 74 16 238 16 56 54 102 916 3 213 44
Below cutoff 1672 1476 725 327 739 183 2715 1277 2341 176 911 488 147 911 1677

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000428495
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2040,696,499 - 40,698,616 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL035665.1 COSMIC
Ensembl Genes ENSG00000229771 Ensembl
GTEx ENSG00000229771 GTEx
Human Proteome Map AL035665.1 Human Proteome Map