AL158825.2 (novel transcript) - Rat Genome Database

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Gene: AL158825.2 (novel transcript) Homo sapiens
Analyze
Symbol: AL158825.2
Name: novel transcript
RGD ID: 16554459
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl975,009,828 - 75,016,036 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:71
Count of miRNA genes:66
Interacting mature miRNAs:69
Transcripts:ENST00000455336
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 4
Low 270 104 421 81 733 73 752 77 1248 156 621 497 18 77 211 2
Below cutoff 1518 1686 1034 393 770 273 2334 1270 2135 210 683 941 121 831 1550 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000455336
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl975,009,828 - 75,016,036 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL158825.2 COSMIC
Ensembl Genes ENSG00000229587 Ensembl
GTEx ENSG00000229587 GTEx
Human Proteome Map AL158825.2 Human Proteome Map