AC044860.1 (golgin subfamily A pseudogene) - Rat Genome Database

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Pathways
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Gene: AC044860.1 (golgin subfamily A pseudogene) Homo sapiens
Analyze
Symbol: AC044860.1
Name: golgin subfamily A pseudogene
RGD ID: 16554348
Description:
Type: transcribed_unprocessed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1585,180,200 - 85,234,795 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2329
Count of miRNA genes:871
Interacting mature miRNAs:1059
Transcripts:ENST00000357253, ENST00000408339, ENST00000442755, ENST00000558470, ENST00000559481, ENST00000560405, ENST00000560756, ENST00000560811
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 43 2
Low 1427 275 888 228 366 77 1794 989 1376 204 1153 1233 163 129 1078 2
Below cutoff 962 1935 717 290 784 282 2186 1099 2195 193 228 350 7 886 1465 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000558470
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1585,209,253 - 85,234,710 (-)Ensembl
RefSeq Acc Id: ENST00000559481
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1585,208,477 - 85,209,871 (-)Ensembl
RefSeq Acc Id: ENST00000560405
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1585,209,065 - 85,234,785 (-)Ensembl
RefSeq Acc Id: ENST00000560756
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1585,205,440 - 85,234,785 (-)Ensembl
RefSeq Acc Id: ENST00000560811
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1585,208,775 - 85,234,795 (-)Ensembl
RefSeq Acc Id: ENST00000648573
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1585,180,200 - 85,234,711 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC044860.1 COSMIC
Ensembl Genes ENSG00000229212 Ensembl
GTEx ENSG00000229212 GTEx
Human Proteome Map AC044860.1 Human Proteome Map