AC012307.1 (novel transcript) - Rat Genome Database

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Gene: AC012307.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC012307.1
Name: novel transcript
RGD ID: 16554256
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl296,145,602 - 96,147,012 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:509
Count of miRNA genes:441
Interacting mature miRNAs:501
Transcripts:ENST00000449242
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 2 2 1 7 1 1 1 9 7 13 6
Low 20 116 122 8 446 8 128 30 178 77 199 69 3 2 61
Below cutoff 144 385 164 22 160 18 592 320 493 62 243 105 6 82 389

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000449242
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl296,145,602 - 96,147,012 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC012307.1 COSMIC
Ensembl Genes ENSG00000228873 Ensembl
GTEx ENSG00000228873 GTEx
Human Proteome Map AC012307.1 Human Proteome Map