AC016396.1 (novel transcript) - Rat Genome Database

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Gene: AC016396.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC016396.1
Name: novel transcript
RGD ID: 16554137
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1058,304,553 - 58,305,621 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:218
Count of miRNA genes:213
Interacting mature miRNAs:216
Transcripts:ENST00000440189
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 4 1
Low 401 288 254 81 197 66 1115 754 739 142 326 322 18 144 897
Below cutoff 1206 1160 869 294 376 213 1918 984 1898 185 601 681 87 582 1190 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000440189
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1058,304,553 - 58,305,621 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC016396.1 COSMIC
Ensembl Genes ENSG00000228527 Ensembl
GTEx ENSG00000228527 GTEx
Human Proteome Map AC016396.1 Human Proteome Map