AL021707.2 (novel transcript, antisense to CBY1) - Rat Genome Database

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Gene: AL021707.2 (novel transcript, antisense to CBY1) Homo sapiens
Analyze
Symbol: AL021707.2
Name: novel transcript, antisense to CBY1
RGD ID: 16554051
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2238,667,585 - 38,681,847 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:882
Count of miRNA genes:596
Interacting mature miRNAs:669
Transcripts:ENST00000412067, ENST00000422408, ENST00000431924, ENST00000444381, ENST00000544928
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1 1 7 8 1 13 1
Low 2397 2207 1505 415 1258 256 4076 1847 3595 390 1436 1593 174 1 1132 2516 4 2
Below cutoff 40 776 215 203 683 203 280 343 131 27 11 19 72 272 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000412067
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2238,675,814 - 38,681,787 (-)Ensembl
RefSeq Acc Id: ENST00000422408
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2238,667,862 - 38,670,303 (-)Ensembl
RefSeq Acc Id: ENST00000431924
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2238,667,585 - 38,681,860 (-)Ensembl
RefSeq Acc Id: ENST00000444381
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2238,670,468 - 38,681,820 (-)Ensembl
RefSeq Acc Id: ENST00000653554
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2238,667,628 - 38,670,354 (-)Ensembl
RefSeq Acc Id: ENST00000656432
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2238,674,875 - 38,681,847 (-)Ensembl
RefSeq Acc Id: ENST00000666365
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2238,670,398 - 38,681,812 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL021707.2 COSMIC
Ensembl Genes ENSG00000228274 Ensembl
GTEx ENSG00000228274 GTEx
Human Proteome Map AL021707.2 Human Proteome Map