EIF3JP1 (EIF3J pseudogene 1) - Rat Genome Database

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Gene: EIF3JP1 (EIF3J pseudogene 1) Homo sapiens
Analyze
Symbol: EIF3JP1 (Ensembl: AL031313.1)
Name: EIF3J pseudogene 1 (Ensembl:eukaryotic translation initiation factor 3 subunit 1 alpha 35kDa (EIF3S1) pseudogene)
RGD ID: 16553969
Description:
Type: processed_pseudogene
Previously known as: AL031313.1; eukaryotic translation initiation factor 3 subunit 1 alpha 35kDa (EIF3S1) pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 EnsemblX82,497,669 - 82,497,924 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:104
Count of miRNA genes:101
Interacting mature miRNAs:103
Transcripts:ENST00000448435
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 3 6 9 8 240 8 1 2 15 11 18 2 2
Below cutoff 65 67 47 13 19 9 125 94 72 9 26 40 4 31 94

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000448435
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX82,497,669 - 82,497,924 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC EIF3JP1 COSMIC
Ensembl Genes ENSG00000228041 Ensembl
GTEx ENSG00000228041 GTEx
Human Proteome Map EIF3JP1 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-05-25 EIF3JP1  EIF3J pseudogene 1  AL031313.1  eukaryotic translation initiation factor 3 subunit 1 alpha 35kDa (EIF3S1) pseudogene  Symbol and/or name change 19259463 PROVISIONAL