AC073343.2 (novel transcript, antisense to ZNF12) - Rat Genome Database

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Gene: AC073343.2 (novel transcript, antisense to ZNF12) Homo sapiens
Analyze
Symbol: AC073343.2
Name: novel transcript, antisense to ZNF12
RGD ID: 16553957
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl76,663,974 - 6,708,901 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:605
Count of miRNA genes:470
Interacting mature miRNAs:513
Transcripts:ENST00000366167, ENST00000413182, ENST00000430844, ENST00000577401
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1 6 7 2
Low 1398 576 1164 164 537 140 1179 773 2541 138 1213 1052 35 1 249 745 5 2
Below cutoff 994 2209 538 436 1137 303 3054 1361 1179 264 228 540 136 948 1957 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000366167
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl76,663,974 - 6,708,901 (+)Ensembl
RefSeq Acc Id: ENST00000413182
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl76,663,974 - 6,665,521 (+)Ensembl
RefSeq Acc Id: ENST00000430844
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl76,663,974 - 6,673,601 (+)Ensembl
RefSeq Acc Id: ENST00000666662
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl76,663,988 - 6,667,637 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC073343.2 COSMIC
Ensembl Genes ENSG00000228010 Ensembl
GTEx ENSG00000228010 GTEx
Human Proteome Map AC073343.2 Human Proteome Map