AL583844.1 (solute carrier family 39 (zinc transporter), member 14 pseudogene (SLC39A14)) - Rat Genome Database

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Gene: AL583844.1 (solute carrier family 39 (zinc transporter), member 14 pseudogene (SLC39A14)) Homo sapiens
Analyze
Symbol: AL583844.1
Name: solute carrier family 39 (zinc transporter), member 14 pseudogene (SLC39A14)
RGD ID: 16553734
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1235,614,674 - 235,616,397 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:285
Count of miRNA genes:271
Interacting mature miRNAs:281
Transcripts:ENST00000424229
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 5 3 1 1 10 3 12 20
Below cutoff 211 142 275 39 85 28 360 110 879 16 465 150 11 100 206 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000424229
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,614,674 - 235,616,397 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL583844.1 COSMIC
Ensembl Genes ENSG00000227236 Ensembl
GTEx ENSG00000227236 GTEx
Human Proteome Map AL583844.1 Human Proteome Map