TRPS1-AS1 (TRPS1 antisense RNA 1) - Rat Genome Database

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Gene: TRPS1-AS1 (TRPS1 antisense RNA 1) Homo sapiens
Analyze
Symbol: TRPS1-AS1 (Ensembl: AF178030.1)
Name: TRPS1 antisense RNA 1 (Ensembl:novel transcript)
RGD ID: 16553712
Description:
Type: lncrna
Previously known as: AF178030.1
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl8115,509,602 - 115,511,325 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:153
Count of miRNA genes:149
Interacting mature miRNAs:152
Transcripts:ENST00000415088
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 2
Low 24 23 15 13 78 3 86 10 31 4 290 33 10 4 35
Below cutoff 414 523 298 126 291 36 1032 282 665 56 397 387 91 235 593 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000415088
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8115,509,602 - 115,511,325 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TRPS1-AS1 COSMIC
Ensembl Genes ENSG00000227170 Ensembl
GTEx ENSG00000227170 GTEx
Human Proteome Map TRPS1-AS1 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-18 TRPS1-AS1  TRPS1 antisense RNA 1  AF178030.1  novel transcript  Symbol and/or name change 19259463 PROVISIONAL