AC012441.1 (novel pseudogene) - Rat Genome Database

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Gene: AC012441.1 (novel pseudogene) Homo sapiens
Analyze
Symbol: AC012441.1
Name: novel pseudogene
RGD ID: 16553682
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl751,388,430 - 51,389,114 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:354
Count of miRNA genes:311
Interacting mature miRNAs:328
Transcripts:ENST00000446669
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 4 3 38 3 4 1 5 19 375 1
Low 262 523 414 164 847 159 571 79 449 230 401 538 17 52 200 3
Below cutoff 1633 1730 1056 308 647 188 2771 1177 2556 129 561 892 120 917 1766 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000446669
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl751,388,430 - 51,389,114 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC012441.1 COSMIC
Ensembl Genes ENSG00000227080 Ensembl
GTEx ENSG00000227080 GTEx
Human Proteome Map AC012441.1 Human Proteome Map