BX276092.2 (chromosome X open reading frame 49 (CXorf49) pseudogene) - Rat Genome Database

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Gene: BX276092.2 (chromosome X open reading frame 49 (CXorf49) pseudogene) Homo sapiens
Analyze
Symbol: BX276092.2
Name: chromosome X open reading frame 49 (CXorf49) pseudogene
RGD ID: 16553609
Description:
Type: transcribed_unprocessed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 EnsemblX71,719,142 - 71,721,278 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:324
Count of miRNA genes:305
Interacting mature miRNAs:316
Transcripts:ENST00000417668
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 4 1 1 3 1 3 361 7
Below cutoff 99 134 87 17 65 11 235 75 245 8 70 83 13 65 146 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000417668
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX71,719,142 - 71,721,278 (+)Ensembl
RefSeq Acc Id: ENST00000457716
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX71,719,925 - 71,720,800 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC BX276092.2 COSMIC
Ensembl Genes ENSG00000226870 Ensembl
GTEx ENSG00000226870 GTEx
Human Proteome Map BX276092.2 Human Proteome Map