AL360181.1 (novel transcript, antisense to PRAP1) - Rat Genome Database

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Gene: AL360181.1 (novel transcript, antisense to PRAP1) Homo sapiens
Analyze
Symbol: AL360181.1
Name: novel transcript, antisense to PRAP1
RGD ID: 16553557
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl10133,345,754 - 133,350,726 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:371
Count of miRNA genes:323
Interacting mature miRNAs:352
Transcripts:ENST00000452591, ENST00000597657
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 15 148 148 52 149 32 12 34 7 27 6 27
Low 1225 1001 942 367 741 287 2458 512 1678 236 1121 1011 87 795 1396 3
Below cutoff 737 1026 371 72 318 16 973 805 1149 76 171 313 56 298 639

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000452591
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl10133,345,754 - 133,350,726 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL360181.1 COSMIC
Ensembl Genes ENSG00000226699 Ensembl
GTEx ENSG00000226699 GTEx
Human Proteome Map AL360181.1 Human Proteome Map