RPL7L1P21 (RPL7L1 pseudogene 21) - Rat Genome Database

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Gene: RPL7L1P21 (RPL7L1 pseudogene 21) Homo sapiens
Analyze
Symbol: RPL7L1P21
Name: RPL7L1 pseudogene 21
RGD ID: 16553490
HGNC Page HGNC:56803
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: AL392088.1; LOC100420170; ribosomal protein L7 like 1 pseudogene; ribosomal protein L7-like 1 (RPL7L1) pseudogene
Related Functional Gene: RPL7L1  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381108,508,573 - 108,509,398 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1108,508,574 - 108,509,243 (+)EnsemblGRCh38hg38GRCh38
GRCh371109,051,195 - 109,052,020 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p13.3NCBI
HuRef1106,944,561 - 106,945,229 (+)NCBIHuRef
CHM1_11109,165,955 - 109,166,623 (+)NCBICHM1_1
T2T-CHM13v2.01108,541,729 - 108,542,550 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:65
Interacting mature miRNAs:66
Transcripts:ENST00000428364
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 3 1 1 5 1
Below cutoff 101 128 57 21 56 6 174 80 166 13 149 72 15 42 135

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000428364
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1108,508,574 - 108,509,243 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL7L1P21 COSMIC
Ensembl Genes ENSG00000226483 Ensembl, ENTREZGENE
GTEx ENSG00000226483 GTEx
HGNC ID HGNC:56803 ENTREZGENE
Human Proteome Map RPL7L1P21 Human Proteome Map
NCBI Gene LOC100420170 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-24 RPL7L1P21  RPL7L1 pseudogene 21  AL392088.1  ribosomal protein L7-like 1 (RPL7L1) pseudogene  Symbol and/or name change 19259463 PROVISIONAL
2020-06-25 AL392088.1  ribosomal protein L7-like 1 (RPL7L1) pseudogene  LOC100420170  ribosomal protein L7 like 1 pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100420170  ribosomal protein L7 like 1 pseudogene  AL392088.1  ribosomal protein L7-like 1 (RPL7L1) pseudogene  Symbol and/or name change 5135510 APPROVED