Z93930.2 (novel transcript) - Rat Genome Database

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Gene: Z93930.2 (novel transcript) Homo sapiens
Analyze
Symbol: Z93930.2
Name: novel transcript
RGD ID: 16553486
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2228,800,683 - 28,848,559 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:837
Count of miRNA genes:521
Interacting mature miRNAs:566
Transcripts:ENST00000418292, ENST00000422972, ENST00000451486, ENST00000458080, ENST00000585003
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 3 8 4 1 3 26 11
Low 2180 2219 1688 591 1442 438 3647 1174 2736 399 1404 1563 168 1 1151 2168 5 2
Below cutoff 255 765 30 33 495 27 702 1016 994 20 27 36 6 53 616 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000418292
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2228,800,704 - 28,839,033 (+)Ensembl
RefSeq Acc Id: ENST00000422972
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2228,818,331 - 28,822,215 (+)Ensembl
RefSeq Acc Id: ENST00000451486
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2228,801,892 - 28,822,215 (+)Ensembl
RefSeq Acc Id: ENST00000458080
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2228,800,683 - 28,848,559 (+)Ensembl
RefSeq Acc Id: ENST00000585003
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2228,800,709 - 28,801,224 (+)Ensembl
RefSeq Acc Id: ENST00000687270
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2228,800,688 - 28,844,886 (+)Ensembl
RefSeq Acc Id: ENST00000692644
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2228,800,683 - 28,822,223 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC Z93930.2 COSMIC
Ensembl Genes ENSG00000226471 Ensembl
GTEx ENSG00000226471 GTEx
Human Proteome Map Z93930.2 Human Proteome Map