PDK1-AS1 (PDK1 and ITGA6 antisense RNA 1) - Rat Genome Database

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Gene: PDK1-AS1 (PDK1 and ITGA6 antisense RNA 1) Homo sapiens
Analyze
Symbol: PDK1-AS1
Name: PDK1 and ITGA6 antisense RNA 1
RGD ID: 16553122
HGNC Page HGNC:40441
Description: ASSOCIATED WITH genetic disease; junctional epidermolysis bullosa with pyloric atresia
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: AC078883.1; lncIHAT
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382172,480,732 - 172,556,464 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2172,464,262 - 172,556,596 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map2q31.1NCBI
T2T-CHM13v2.02172,966,980 - 173,042,716 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:33380467  


Genomics

Variants

.
Variants in PDK1-AS1
327 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_000210.4(ITGA6):c.2247C>G (p.Val749=) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000375934]|not provided [RCV000881983] Chr2:172487730 [GRCh38]
Chr2:173352458 [GRCh37]
Chr2:2q31.1
benign|likely benign|uncertain significance
NM_000210.4(ITGA6):c.1970+12_1970+14del deletion Junctional epidermolysis bullosa with pyloric atresia [RCV000267224]|not provided [RCV000907269] Chr2:172487148..172487150 [GRCh38]
Chr2:173351876..173351878 [GRCh37]
Chr2:2q31.1
benign|conflicting interpretations of pathogenicity|uncertain significance
NM_000210.4(ITGA6):c.1904A>G (p.Asn635Ser) single nucleotide variant Inborn genetic diseases [RCV003295251] Chr2:172487072 [GRCh38]
Chr2:173351800 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.3006T>C (p.Phe1002=) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000358668]|not provided [RCV000963267] Chr2:172497992 [GRCh38]
Chr2:173362720 [GRCh37]
Chr2:2q31.1
benign|uncertain significance
NM_000210.4(ITGA6):c.2679+13A>C single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001128720] Chr2:172489671 [GRCh38]
Chr2:173354399 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*648G>A single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001128830] Chr2:172504716 [GRCh38]
Chr2:173369444 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*1442T>C single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001134474] Chr2:172505510 [GRCh38]
Chr2:173370238 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*142dup duplication Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV002500684]|Junctional epidermolysis bullosa with pyloric atresia [RCV000490534] Chr2:172504202..172504203 [GRCh38]
Chr2:173368930..173368931 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*23-72_*23-34del deletion not provided [RCV001652655] Chr2:172504016..172504054 [GRCh38]
Chr2:173368744..173368782 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.*204A>T single nucleotide variant not provided [RCV001779641] Chr2:172504272 [GRCh38]
Chr2:173369000 [GRCh37]
Chr2:2q31.1
likely benign
GRCh38/hg38 2q24.3-32.1(chr2:163965382-182195062)x1 copy number loss See cases [RCV000054122] Chr2:163965382..182195062 [GRCh38]
Chr2:164821892..183059789 [GRCh37]
Chr2:164530138..182768034 [NCBI36]
Chr2:2q24.3-32.1
pathogenic
GRCh38/hg38 2q31.1(chr2:172296909-172932166)x3 copy number gain See cases [RCV000142667] Chr2:172296909..172932166 [GRCh38]
Chr2:173161637..173796894 [GRCh37]
Chr2:172869883..173505140 [NCBI36]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2245-3del deletion Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV002504119]|Junctional epidermolysis bullosa with pyloric atresia [RCV000318976]|not provided [RCV002057607] Chr2:172487719 [GRCh38]
Chr2:173352447 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.*702C>T single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001128831] Chr2:172504770 [GRCh38]
Chr2:173369498 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.*2081G>A single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001135936] Chr2:172506149 [GRCh38]
Chr2:173370877 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2889+41C>G single nucleotide variant not provided [RCV001671947] Chr2:172491372 [GRCh38]
Chr2:173356100 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.*435A>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000331172]|not provided [RCV001672565] Chr2:172504503 [GRCh38]
Chr2:173369231 [GRCh37]
Chr2:2q31.1
benign
GRCh38/hg38 2q24.3-31.1(chr2:164850117-175559190)x1 copy number loss See cases [RCV000051201] Chr2:164850117..175559190 [GRCh38]
Chr2:165706627..176423918 [GRCh37]
Chr2:165414873..176132164 [NCBI36]
Chr2:2q24.3-31.1
pathogenic
NM_000210.4(ITGA6):c.*50G>A single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000260596] Chr2:172504118 [GRCh38]
Chr2:173368846 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*1655G>T single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000270112] Chr2:172505723 [GRCh38]
Chr2:173370451 [GRCh37]
Chr2:2q31.1
benign|uncertain significance
NM_000210.4(ITGA6):c.*1383C>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000271041] Chr2:172505451 [GRCh38]
Chr2:173370179 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*434_*435insG insertion Junctional epidermolysis bullosa with pyloric atresia [RCV000273723] Chr2:172504502..172504503 [GRCh38]
Chr2:173369230..173369231 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2890-19A>G single nucleotide variant not provided [RCV002781223] Chr2:172491406 [GRCh38]
Chr2:173356134 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2244+19T>G single nucleotide variant not provided [RCV002786769] Chr2:172487649 [GRCh38]
Chr2:173352377 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.*2069del deletion Junctional epidermolysis bullosa with pyloric atresia [RCV000334949] Chr2:172506136 [GRCh38]
Chr2:173370864 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*2349T>C single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000352805] Chr2:172506417 [GRCh38]
Chr2:173371145 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.*776T>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000407650] Chr2:172504844 [GRCh38]
Chr2:173369572 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.1781G>A (p.Arg594His) single nucleotide variant not provided [RCV003080705] Chr2:172485191 [GRCh38]
Chr2:173349919 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2799C>G (p.Asn933Lys) single nucleotide variant Inborn genetic diseases [RCV003179558] Chr2:172491241 [GRCh38]
Chr2:173355969 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2948C>T (p.Ala983Val) single nucleotide variant Inborn genetic diseases [RCV003181285] Chr2:172491483 [GRCh38]
Chr2:173356211 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*719T>C single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000286791] Chr2:172504787 [GRCh38]
Chr2:173369515 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.3132A>G (p.Arg1044=) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000300621]|not provided [RCV003727690] Chr2:172501789 [GRCh38]
Chr2:173366517 [GRCh37]
Chr2:2q31.1
benign|uncertain significance
NM_000210.4(ITGA6):c.*1194A>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000310985] Chr2:172505262 [GRCh38]
Chr2:173369990 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.*574C>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000383444] Chr2:172504642 [GRCh38]
Chr2:173369370 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.1640A>G (p.Lys547Arg) single nucleotide variant not provided [RCV002621389] Chr2:172484872 [GRCh38]
Chr2:173349600 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2747C>A (p.Ser916Tyr) single nucleotide variant not provided [RCV002811150] Chr2:172491091 [GRCh38]
Chr2:173355819 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2726T>C (p.Ile909Thr) single nucleotide variant Inborn genetic diseases [RCV002822670] Chr2:172491070 [GRCh38]
Chr2:173355798 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1711-13G>A single nucleotide variant not provided [RCV002592848] Chr2:172485108 [GRCh38]
Chr2:173349836 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2785A>G (p.Ser929Gly) single nucleotide variant not provided [RCV002650158] Chr2:172491227 [GRCh38]
Chr2:173355955 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2215C>A (p.Leu739Ile) single nucleotide variant not provided [RCV002658747] Chr2:172487601 [GRCh38]
Chr2:173352329 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2680-12A>C single nucleotide variant not provided [RCV002659125] Chr2:172491012 [GRCh38]
Chr2:173355740 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2705G>A (p.Arg902Gln) single nucleotide variant Inborn genetic diseases [RCV002660419] Chr2:172491049 [GRCh38]
Chr2:173355777 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_002610.5(PDK1):c.44C>T (p.Pro15Leu) single nucleotide variant not specified [RCV004236899] Chr2:172556194 [GRCh38]
Chr2:173420922 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.1682T>G (p.Val561Gly) single nucleotide variant Inborn genetic diseases [RCV002776645] Chr2:172484914 [GRCh38]
Chr2:173349642 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.1900A>G (p.Ser634Gly) single nucleotide variant Inborn genetic diseases [RCV002818134] Chr2:172487068 [GRCh38]
Chr2:173351796 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2033T>C (p.Val678Ala) single nucleotide variant not provided [RCV002904037] Chr2:172487326 [GRCh38]
Chr2:173352054 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.3129G>C (p.Lys1043Asn) single nucleotide variant Inborn genetic diseases [RCV002973369] Chr2:172501786 [GRCh38]
Chr2:173366514 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2515T>A (p.Leu839Ile) single nucleotide variant Inborn genetic diseases [RCV002999473]|not provided [RCV003008970] Chr2:172489494 [GRCh38]
Chr2:173354222 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*22+240C>T single nucleotide variant not provided [RCV001644354] Chr2:172502141 [GRCh38]
Chr2:173366869 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.2161-16T>C single nucleotide variant not provided [RCV001665996] Chr2:172487531 [GRCh38]
Chr2:173352259 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.2403-30C>T single nucleotide variant not provided [RCV001669018] Chr2:172488096 [GRCh38]
Chr2:173352824 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.2160+14G>C single nucleotide variant not provided [RCV002182603] Chr2:172487467 [GRCh38]
Chr2:173352195 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.*2315A>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000295095] Chr2:172506383 [GRCh38]
Chr2:173371111 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2704C>T (p.Arg902Trp) single nucleotide variant Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV002502286]|Junctional epidermolysis bullosa with pyloric atresia [RCV000296803]|not provided [RCV003727688] Chr2:172491048 [GRCh38]
Chr2:173355776 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.*919A>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000298369] Chr2:172504987 [GRCh38]
Chr2:173369715 [GRCh37]
Chr2:2q31.1
likely benign|uncertain significance
NM_000210.4(ITGA6):c.*782A>C single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000299717] Chr2:172504850 [GRCh38]
Chr2:173369578 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*867T>C single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000338100] Chr2:172504935 [GRCh38]
Chr2:173369663 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2861C>T (p.Ser954Leu) single nucleotide variant Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV002488706]|Junctional epidermolysis bullosa with pyloric atresia [RCV000341392]|not provided [RCV003727689] Chr2:172491303 [GRCh38]
Chr2:173356031 [GRCh37]
Chr2:2q31.1
likely benign|uncertain significance
NM_000210.4(ITGA6):c.1969A>G (p.Ile657Val) single nucleotide variant Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV002488705]|Inborn genetic diseases [RCV003343787]|Junctional epidermolysis bullosa with pyloric atresia [RCV000362303] Chr2:172487137 [GRCh38]
Chr2:173351865 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*1935G>A single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000374704] Chr2:172506003 [GRCh38]
Chr2:173370731 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*1795C>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000380423] Chr2:172505863 [GRCh38]
Chr2:173370591 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*703G>A single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000382439] Chr2:172504771 [GRCh38]
Chr2:173369499 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*2362_*2364dup duplication Junctional epidermolysis bullosa with pyloric atresia [RCV000391207] Chr2:172506427..172506428 [GRCh38]
Chr2:173371155..173371156 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*882A>C single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000407663] Chr2:172504950 [GRCh38]
Chr2:173369678 [GRCh37]
Chr2:2q31.1
likely benign|uncertain significance
NM_000210.4(ITGA6):c.2728G>A (p.Asp910Asn) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000349267]|not provided [RCV000889747] Chr2:172491072 [GRCh38]
Chr2:173355800 [GRCh37]
Chr2:2q31.1
benign|likely benign|uncertain significance
NM_000210.4(ITGA6):c.2505+9G>C single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001135714]|not provided [RCV000903657] Chr2:172488237 [GRCh38]
Chr2:173352965 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.2109G>A (p.Thr703=) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000358517]|not provided [RCV000917107] Chr2:172487402 [GRCh38]
Chr2:173352130 [GRCh37]
Chr2:2q31.1
benign|uncertain significance
NM_000210.4(ITGA6):c.3000T>C (p.Thr1000=) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001131345]|not provided [RCV000921775] Chr2:172497986 [GRCh38]
Chr2:173362714 [GRCh37]
Chr2:2q31.1
likely benign|uncertain significance
NM_000210.4(ITGA6):c.2777T>C (p.Leu926Pro) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001128722] Chr2:172491121 [GRCh38]
Chr2:173355849 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*2285G>T single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001128941] Chr2:172506353 [GRCh38]
Chr2:173371081 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*2291G>A single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001128942] Chr2:172506359 [GRCh38]
Chr2:173371087 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*873A>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001131486] Chr2:172504941 [GRCh38]
Chr2:173369669 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.3069C>T (p.Leu1023=) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001134345]|not provided [RCV003769634] Chr2:172498055 [GRCh38]
Chr2:173362783 [GRCh37]
Chr2:2q31.1
likely benign|uncertain significance
GRCh38/hg38 2q24.1-31.1(chr2:154294042-175989372)x3 copy number gain See cases [RCV000142286] Chr2:154294042..175989372 [GRCh38]
Chr2:155150555..176854100 [GRCh37]
Chr2:154858801..176562346 [NCBI36]
Chr2:2q24.1-31.1
pathogenic
NM_000210.4(ITGA6):c.*91AGA[1] microsatellite Childhood-onset schizophrenia [RCV000202327] Chr2:172504158..172504160 [GRCh38]
Chr2:173368886..173368888 [GRCh37]
Chr2:2q31.1
likely pathogenic
NM_000210.4(ITGA6):c.2793C>T (p.Asn931=) single nucleotide variant not provided [RCV000925343] Chr2:172491235 [GRCh38]
Chr2:173355963 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.*97G>A single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001134348] Chr2:172504165 [GRCh38]
Chr2:173368893 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*1413T>C single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001134473] Chr2:172505481 [GRCh38]
Chr2:173370209 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2324+9T>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001135713] Chr2:172487816 [GRCh38]
Chr2:173352544 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*408C>T single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001135815] Chr2:172504476 [GRCh38]
Chr2:173369204 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.*435A>T single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001135816] Chr2:172504503 [GRCh38]
Chr2:173369231 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*1883C>A single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001135935] Chr2:172505951 [GRCh38]
Chr2:173370679 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2169G>A (p.Gln723=) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001135712]|not provided [RCV000944033] Chr2:172487555 [GRCh38]
Chr2:173352283 [GRCh37]
Chr2:2q31.1
likely benign|uncertain significance
NM_000210.4(ITGA6):c.2825G>A (p.Arg942Gln) single nucleotide variant Inborn genetic diseases [RCV003082760]|not provided [RCV003100454] Chr2:172491267 [GRCh38]
Chr2:173355995 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2862G>C (p.Ser954=) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000404314]|not provided [RCV000967971] Chr2:172491304 [GRCh38]
Chr2:173356032 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.3167del (p.Lys1056fs) deletion Junctional epidermolysis bullosa with pyloric atresia [RCV000761293] Chr2:172501823 [GRCh38]
Chr2:173366551 [GRCh37]
Chr2:2q31.1
pathogenic
NM_000210.4(ITGA6):c.2926C>T (p.Arg976Ter) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000779286]|not provided [RCV003768443] Chr2:172491461 [GRCh38]
Chr2:173356189 [GRCh37]
Chr2:2q31.1
pathogenic|conflicting interpretations of pathogenicity|uncertain significance
NM_000210.4(ITGA6):c.2136A>T (p.Ala712=) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000266147]|not provided [RCV001707658] Chr2:172487429 [GRCh38]
Chr2:173352157 [GRCh37]
Chr2:2q31.1
benign
GRCh38/hg38 2q31.1-32.1(chr2:170407688-186189894)x1 copy number loss See cases [RCV000054127] Chr2:170407688..186189894 [GRCh38]
Chr2:171264198..187054621 [GRCh37]
Chr2:170972444..186762866 [NCBI36]
Chr2:2q31.1-32.1
pathogenic
GRCh38/hg38 2q31.1-32.2(chr2:171429233-189179568)x1 copy number loss See cases [RCV000136850] Chr2:171429233..189179568 [GRCh38]
Chr2:172285743..190044294 [GRCh37]
Chr2:171993989..189752539 [NCBI36]
Chr2:2q31.1-32.2
pathogenic
NM_000210.4(ITGA6):c.2819C>T (p.Pro940Leu) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000347958]|not provided [RCV002057608] Chr2:172491261 [GRCh38]
Chr2:173355989 [GRCh37]
Chr2:2q31.1
benign|uncertain significance
NM_000210.4(ITGA6):c.2161-17G>A single nucleotide variant Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV002494214]|not provided [RCV002119446] Chr2:172487530 [GRCh38]
Chr2:173352258 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.2161-18C>T single nucleotide variant not provided [RCV002163285] Chr2:172487529 [GRCh38]
Chr2:173352257 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.3075G>A (p.Gly1025=) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000261791]|not provided [RCV002523095] Chr2:172498061 [GRCh38]
Chr2:173362789 [GRCh37]
Chr2:2q31.1
likely benign|uncertain significance
NM_000210.4(ITGA6):c.*1108A>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000276974] Chr2:172505176 [GRCh38]
Chr2:173369904 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*595C>T single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000291652] Chr2:172504663 [GRCh38]
Chr2:173369391 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.*2374T>C single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000313218] Chr2:172506442 [GRCh38]
Chr2:173371170 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.1708C>T (p.Gln570Ter) single nucleotide variant not provided [RCV002276083] Chr2:172484940 [GRCh38]
Chr2:173349668 [GRCh37]
Chr2:2q31.1
pathogenic
NM_000210.4(ITGA6):c.*308C>T single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000389121] Chr2:172504376 [GRCh38]
Chr2:173369104 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*2088T>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000391216] Chr2:172506156 [GRCh38]
Chr2:173370884 [GRCh37]
Chr2:2q31.1
benign|uncertain significance
NM_000210.4(ITGA6):c.2538C>T (p.Leu846=) single nucleotide variant Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV002479023]|Junctional epidermolysis bullosa with pyloric atresia [RCV001135715]|not provided [RCV000895935] Chr2:172489517 [GRCh38]
Chr2:173354245 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.2296G>T (p.Asp766Tyr) single nucleotide variant ITGA6-related condition [RCV003912399]|Junctional epidermolysis bullosa with pyloric atresia [RCV000278674]|not provided [RCV000956002] Chr2:172487779 [GRCh38]
Chr2:173352507 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.1855-7C>T single nucleotide variant not provided [RCV002596100] Chr2:172487016 [GRCh38]
Chr2:173351744 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2058G>A (p.Arg686=) single nucleotide variant not provided [RCV002715807] Chr2:172487351 [GRCh38]
Chr2:173352079 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2608A>G (p.Lys870Glu) single nucleotide variant Inborn genetic diseases [RCV002767718] Chr2:172489587 [GRCh38]
Chr2:173354315 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2224C>T (p.Pro742Ser) single nucleotide variant Inborn genetic diseases [RCV002772792] Chr2:172487610 [GRCh38]
Chr2:173352338 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2063C>T (p.Pro688Leu) single nucleotide variant Inborn genetic diseases [RCV002835979] Chr2:172487356 [GRCh38]
Chr2:173352084 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2758G>A (p.Glu920Lys) single nucleotide variant Inborn genetic diseases [RCV002860020] Chr2:172491102 [GRCh38]
Chr2:173355830 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.1854T>C (p.Asp618=) single nucleotide variant not provided [RCV002904372] Chr2:172485264 [GRCh38]
Chr2:173349992 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2333A>G (p.Asn778Ser) single nucleotide variant Inborn genetic diseases [RCV002955162] Chr2:172487969 [GRCh38]
Chr2:173352697 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.1645A>C (p.Thr549Pro) single nucleotide variant not provided [RCV002974885] Chr2:172484877 [GRCh38]
Chr2:173349605 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2737A>G (p.Arg913Gly) single nucleotide variant Inborn genetic diseases [RCV002978632] Chr2:172491081 [GRCh38]
Chr2:173355809 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2778+14A>G single nucleotide variant not provided [RCV003014389] Chr2:172491136 [GRCh38]
Chr2:173355864 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.3145C>G (p.His1049Asp) single nucleotide variant not provided [RCV003018680] Chr2:172501802 [GRCh38]
Chr2:173366530 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*2309C>T single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001128943] Chr2:172506377 [GRCh38]
Chr2:173371105 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.*58T>C single nucleotide variant Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV002497544]|Junctional epidermolysis bullosa with pyloric atresia [RCV001134346] Chr2:172504126 [GRCh38]
Chr2:173368854 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.*65C>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001134347] Chr2:172504133 [GRCh38]
Chr2:173368861 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2543C>T (p.Thr848Ile) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001135716] Chr2:172489522 [GRCh38]
Chr2:173354250 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*101G>C single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001135814] Chr2:172504169 [GRCh38]
Chr2:173368897 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.3114+142G>C single nucleotide variant not provided [RCV001654263] Chr2:172498242 [GRCh38]
Chr2:173362970 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.2244+16A>C single nucleotide variant not provided [RCV001679898] Chr2:172487646 [GRCh38]
Chr2:173352374 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.2779-42A>C single nucleotide variant not provided [RCV001681642] Chr2:172491179 [GRCh38]
Chr2:173355907 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.1744A>G (p.Ile582Val) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000309898]|not provided [RCV000968994] Chr2:172485154 [GRCh38]
Chr2:173349882 [GRCh37]
Chr2:2q31.1
benign|uncertain significance
NM_000210.4(ITGA6):c.2082C>T (p.Asp694=) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000324684]|not provided [RCV001613080] Chr2:172487375 [GRCh38]
Chr2:173352103 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.*204_*205insT insertion Junctional epidermolysis bullosa with pyloric atresia [RCV000332266]|not provided [RCV001613081] Chr2:172504272..172504273 [GRCh38]
Chr2:173369000..173369001 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.3114+177C>T single nucleotide variant not provided [RCV001654868] Chr2:172498277 [GRCh38]
Chr2:173363005 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.2506-99del deletion not provided [RCV001668824] Chr2:172489386 [GRCh38]
Chr2:173354114 [GRCh37]
Chr2:2q31.1
benign
GRCh38/hg38 2q31.1(chr2:172366752-176361187)x1 copy number loss See cases [RCV000052554] Chr2:172366752..176361187 [GRCh38]
Chr2:173231480..177225915 [GRCh37]
Chr2:172939726..176934161 [NCBI36]
Chr2:2q31.1
pathogenic
NM_000210.4(ITGA6):c.*1940dup duplication Junctional epidermolysis bullosa with pyloric atresia [RCV000282295] Chr2:172506006..172506007 [GRCh38]
Chr2:173370734..173370735 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2393C>T (p.Ser798Leu) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000317348] Chr2:172488029 [GRCh38]
Chr2:173352757 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*1901dup duplication Junctional epidermolysis bullosa with pyloric atresia [RCV000322325] Chr2:172505961..172505962 [GRCh38]
Chr2:173370689..173370690 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.*1656G>T single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000322810] Chr2:172505724 [GRCh38]
Chr2:173370452 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*751A>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000339493] Chr2:172504819 [GRCh38]
Chr2:173369547 [GRCh37]
Chr2:2q31.1
likely benign|uncertain significance
NM_000210.4(ITGA6):c.*1021_*1024dup duplication Junctional epidermolysis bullosa with pyloric atresia [RCV000369505] Chr2:172505085..172505086 [GRCh38]
Chr2:173369813..173369814 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2651A>G (p.Gln884Arg) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000388751]|not provided [RCV002521333] Chr2:172489630 [GRCh38]
Chr2:173354358 [GRCh37]
Chr2:2q31.1
likely benign|uncertain significance
NM_000210.4(ITGA6):c.2890-15A>C single nucleotide variant not provided [RCV002605482] Chr2:172491410 [GRCh38]
Chr2:173356138 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2402+8T>A single nucleotide variant not provided [RCV002607979] Chr2:172488046 [GRCh38]
Chr2:173352774 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1947A>G (p.Gln649=) single nucleotide variant not provided [RCV002623131] Chr2:172487115 [GRCh38]
Chr2:173351843 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1781G>C (p.Arg594Pro) single nucleotide variant Inborn genetic diseases [RCV002911579] Chr2:172485191 [GRCh38]
Chr2:173349919 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.3106C>T (p.Leu1036=) single nucleotide variant not provided [RCV002937996] Chr2:172498092 [GRCh38]
Chr2:173362820 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1943A>C (p.Asn648Thr) single nucleotide variant not provided [RCV002972074] Chr2:172487111 [GRCh38]
Chr2:173351839 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2851A>T (p.Ile951Phe) single nucleotide variant Inborn genetic diseases [RCV002981611]|not provided [RCV003108210] Chr2:172491293 [GRCh38]
Chr2:173356021 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2774C>T (p.Thr925Ile) single nucleotide variant Inborn genetic diseases [RCV003006340]|not provided [RCV003006341] Chr2:172491118 [GRCh38]
Chr2:173355846 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2989-6C>T single nucleotide variant Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV002488707]|Junctional epidermolysis bullosa with pyloric atresia [RCV000301585]|not provided [RCV000883619] Chr2:172497969 [GRCh38]
Chr2:173362697 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.2858G>A (p.Arg953His) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000308413]|not provided [RCV000900532] Chr2:172491300 [GRCh38]
Chr2:173356028 [GRCh37]
Chr2:2q31.1
likely benign|uncertain significance
NM_000210.4(ITGA6):c.2862G>A (p.Ser954=) single nucleotide variant not provided [RCV000918182] Chr2:172491304 [GRCh38]
Chr2:173356032 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2679+7C>T single nucleotide variant Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV002495545]|not provided [RCV000922573] Chr2:172489665 [GRCh38]
Chr2:173354393 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2680-14A>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001128721]|not provided [RCV003769236] Chr2:172491010 [GRCh38]
Chr2:173355738 [GRCh37]
Chr2:2q31.1
likely benign|uncertain significance
NM_000210.4(ITGA6):c.1850T>C (p.Ile617Thr) single nucleotide variant Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV002491402]|Inborn genetic diseases [RCV004032297]|Junctional epidermolysis bullosa with pyloric atresia [RCV001134216]|not provided [RCV001354872] Chr2:172485260 [GRCh38]
Chr2:173349988 [GRCh37]
Chr2:2q31.1
benign|likely benign|uncertain significance
NM_000210.4(ITGA6):c.*1339T>A single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001134471] Chr2:172505407 [GRCh38]
Chr2:173370135 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.*1348C>T single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001134472] Chr2:172505416 [GRCh38]
Chr2:173370144 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*1520T>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001134475] Chr2:172505588 [GRCh38]
Chr2:173370316 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.1971-30T>G single nucleotide variant not provided [RCV001692812] Chr2:172487234 [GRCh38]
Chr2:173351962 [GRCh37]
Chr2:2q31.1
benign
GRCh38/hg38 2q31.1-31.2(chr2:171513047-177854080)x1 copy number loss See cases [RCV000139646] Chr2:171513047..177854080 [GRCh38]
Chr2:172369557..178718807 [GRCh37]
Chr2:172077803..178427053 [NCBI36]
Chr2:2q31.1-31.2
pathogenic
NM_000210.4(ITGA6):c.2506-1G>C single nucleotide variant Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV002052426] Chr2:172489484 [GRCh38]
Chr2:173354212 [GRCh37]
Chr2:2q31.1
pathogenic
NM_000210.4(ITGA6):c.*1809T>C single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000283646] Chr2:172505877 [GRCh38]
Chr2:173370605 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.2792A>G (p.Asn931Ser) single nucleotide variant Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV002504120]|Inborn genetic diseases [RCV004021780]|Junctional epidermolysis bullosa with pyloric atresia [RCV000290729]|not provided [RCV002521334] Chr2:172491234 [GRCh38]
Chr2:173355962 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*1221C>T single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000367961] Chr2:172505289 [GRCh38]
Chr2:173370017 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2796G>C (p.Val932=) single nucleotide variant not provided [RCV000940652] Chr2:172491238 [GRCh38]
Chr2:173355966 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2982C>T (p.Gly994=) single nucleotide variant not provided [RCV002633125] Chr2:172491517 [GRCh38]
Chr2:173356245 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.3165C>T (p.His1055=) single nucleotide variant not provided [RCV002658883] Chr2:172501822 [GRCh38]
Chr2:173366550 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.3064A>G (p.Ile1022Val) single nucleotide variant Inborn genetic diseases [RCV002683358] Chr2:172498050 [GRCh38]
Chr2:173362778 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2938_2939insT (p.Asp980fs) insertion Junctional epidermolysis bullosa with pyloric atresia [RCV001329697] Chr2:172491473..172491474 [GRCh38]
Chr2:173356201..173356202 [GRCh37]
Chr2:2q31.1
likely pathogenic
NM_000210.4(ITGA6):c.*747A>G single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001128832] Chr2:172504815 [GRCh38]
Chr2:173369543 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.*2124T>A single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001128940] Chr2:172506192 [GRCh38]
Chr2:173370920 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2900A>C (p.Lys967Thr) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001131344]|not provided [RCV001856699] Chr2:172491435 [GRCh38]
Chr2:173356163 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*1135T>C single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV001131487] Chr2:172505203 [GRCh38]
Chr2:173369931 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.*1459G>T single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000328635] Chr2:172505527 [GRCh38]
Chr2:173370255 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.*678T>C single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000344217] Chr2:172504746 [GRCh38]
Chr2:173369474 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.*1660dup duplication Junctional epidermolysis bullosa with pyloric atresia [RCV000380967] Chr2:172505721..172505722 [GRCh38]
Chr2:173370449..173370450 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2981G>A (p.Gly994Asp) single nucleotide variant not provided [RCV002578010] Chr2:172491516 [GRCh38]
Chr2:173356244 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.1752C>T (p.Ala584=) single nucleotide variant not provided [RCV002643760] Chr2:172485162 [GRCh38]
Chr2:173349890 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2136A>G (p.Ala712=) single nucleotide variant not provided [RCV003112778] Chr2:172487429 [GRCh38]
Chr2:173352157 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2505+104G>A single nucleotide variant not provided [RCV001665670] Chr2:172488332 [GRCh38]
Chr2:173353060 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.2788G>A (p.Val930Met) single nucleotide variant Junctional epidermolysis bullosa with pyloric atresia [RCV000387501]|not provided [RCV001690097] Chr2:172491230 [GRCh38]
Chr2:173355958 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.2820G>A (p.Pro940=) single nucleotide variant Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV002487466]|Junctional epidermolysis bullosa with pyloric atresia [RCV000392772]|not provided [RCV000968995] Chr2:172491262 [GRCh38]
Chr2:173355990 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.3222G>A (p.Ter1074=) single nucleotide variant Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV002487467]|Junctional epidermolysis bullosa with pyloric atresia [RCV000353064]|not provided [RCV000968996] Chr2:172501879 [GRCh38]
Chr2:173366607 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.2821C>T (p.Leu941=) single nucleotide variant not provided [RCV003852771] Chr2:172491263 [GRCh38]
Chr2:173355991 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1606A>G (p.Arg536Gly) single nucleotide variant Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV003328117] Chr2:172484838 [GRCh38]
Chr2:173349566 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2787C>T (p.Ser929=) single nucleotide variant not provided [RCV003873531] Chr2:172491229 [GRCh38]
Chr2:173355957 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2505+12C>T single nucleotide variant not provided [RCV003571329] Chr2:172488240 [GRCh38]
Chr2:173352968 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1857dup (p.His620fs) duplication not provided [RCV003570584] Chr2:172487023..172487024 [GRCh38]
Chr2:173351751..173351752 [GRCh37]
Chr2:2q31.1
pathogenic
NM_000210.4(ITGA6):c.1941A>G (p.Gly647=) single nucleotide variant not provided [RCV003570752] Chr2:172487109 [GRCh38]
Chr2:173351837 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1684_1685del (p.Cys562fs) microsatellite not provided [RCV003571884] Chr2:172484913..172484914 [GRCh38]
Chr2:173349641..173349642 [GRCh37]
Chr2:2q31.1
pathogenic
NM_000210.4(ITGA6):c.3027G>A (p.Gln1009=) single nucleotide variant not provided [RCV003543615] Chr2:172498013 [GRCh38]
Chr2:173362741 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2989-18T>G single nucleotide variant not provided [RCV003691369] Chr2:172497957 [GRCh38]
Chr2:173362685 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2595G>A (p.Leu865=) single nucleotide variant not provided [RCV003876183] Chr2:172489574 [GRCh38]
Chr2:173354302 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2400G>A (p.Ser800=) single nucleotide variant not provided [RCV003660143] Chr2:172488036 [GRCh38]
Chr2:173352764 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1971-5A>G single nucleotide variant not provided [RCV003876616] Chr2:172487259 [GRCh38]
Chr2:173351987 [GRCh37]
Chr2:2q31.1
likely benign
NC_000002.12:g.172488124AG[1] microsatellite not provided [RCV003692339] Chr2:172488124..172488125 [GRCh38]
Chr2:173352852..173352853 [GRCh37]
Chr2:2q31.1
pathogenic
NM_000210.4(ITGA6):c.2010G>A (p.Lys670=) single nucleotide variant not provided [RCV003826036] Chr2:172487303 [GRCh38]
Chr2:173352031 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2889+16G>T single nucleotide variant not provided [RCV003693504] Chr2:172491347 [GRCh38]
Chr2:173356075 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1962T>C (p.Tyr654=) single nucleotide variant not provided [RCV003827344] Chr2:172487130 [GRCh38]
Chr2:173351858 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2623_2632del (p.Gly875fs) deletion not provided [RCV003716339] Chr2:172489599..172489608 [GRCh38]
Chr2:173354327..173354336 [GRCh37]
Chr2:2q31.1
pathogenic
NM_000210.4(ITGA6):c.2399del (p.Ser800fs) deletion not provided [RCV003576486] Chr2:172488035 [GRCh38]
Chr2:173352763 [GRCh37]
Chr2:2q31.1
pathogenic
NM_000210.4(ITGA6):c.2245-12_2245-11del deletion not provided [RCV003660679] Chr2:172487715..172487716 [GRCh38]
Chr2:173352443..173352444 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1550-12A>G single nucleotide variant not provided [RCV003716448] Chr2:172484770 [GRCh38]
Chr2:173349498 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2889+16G>A single nucleotide variant not provided [RCV003831761] Chr2:172491347 [GRCh38]
Chr2:173356075 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2779-13T>C single nucleotide variant not provided [RCV003695076] Chr2:172491208 [GRCh38]
Chr2:173355936 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1971-9T>A single nucleotide variant not provided [RCV003577946] Chr2:172487255 [GRCh38]
Chr2:173351983 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1854+7C>G single nucleotide variant not provided [RCV003696679] Chr2:172485271 [GRCh38]
Chr2:173349999 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1945C>G (p.Gln649Glu) single nucleotide variant not provided [RCV003686735] Chr2:172487113 [GRCh38]
Chr2:173351841 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2244+1G>A single nucleotide variant not provided [RCV003576518] Chr2:172487631 [GRCh38]
Chr2:173352359 [GRCh37]
Chr2:2q31.1
likely pathogenic
NM_000210.4(ITGA6):c.2691C>T (p.Asn897=) single nucleotide variant not provided [RCV003829942] Chr2:172491035 [GRCh38]
Chr2:173355763 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2547A>G (p.Ala849=) single nucleotide variant not provided [RCV003663213] Chr2:172489526 [GRCh38]
Chr2:173354254 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2046T>C (p.Pro682=) single nucleotide variant not provided [RCV003694939] Chr2:172487339 [GRCh38]
Chr2:173352067 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2334T>C (p.Asn778=) single nucleotide variant not provided [RCV003693367] Chr2:172487970 [GRCh38]
Chr2:173352698 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1550-19T>C single nucleotide variant not provided [RCV003830003] Chr2:172484763 [GRCh38]
Chr2:173349491 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1990C>T (p.Leu664=) single nucleotide variant not provided [RCV003663232] Chr2:172487283 [GRCh38]
Chr2:173352011 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2640T>C (p.Thr880=) single nucleotide variant not provided [RCV003545333] Chr2:172489619 [GRCh38]
Chr2:173354347 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1729C>T (p.Leu577=) single nucleotide variant not provided [RCV003714925] Chr2:172485139 [GRCh38]
Chr2:173349867 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2402+17A>T single nucleotide variant not provided [RCV003544279] Chr2:172488055 [GRCh38]
Chr2:173352783 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.3184C>T (p.Gln1062Ter) single nucleotide variant not provided [RCV003690075] Chr2:172501841 [GRCh38]
Chr2:173366569 [GRCh37]
Chr2:2q31.1
pathogenic
NM_000210.4(ITGA6):c.2160+16G>A single nucleotide variant not provided [RCV003829386] Chr2:172487469 [GRCh38]
Chr2:173352197 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1855-20_1855-19del deletion not provided [RCV003829886] Chr2:172487002..172487003 [GRCh38]
Chr2:173351730..173351731 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2902C>T (p.Leu968=) single nucleotide variant not provided [RCV003687425] Chr2:172491437 [GRCh38]
Chr2:173356165 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2127C>T (p.Thr709=) single nucleotide variant not provided [RCV003662701] Chr2:172487420 [GRCh38]
Chr2:173352148 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2211_2212del (p.Cys737_Glu738delinsTer) microsatellite not provided [RCV003544954] Chr2:172487595..172487596 [GRCh38]
Chr2:173352323..173352324 [GRCh37]
Chr2:2q31.1
pathogenic
NM_000210.4(ITGA6):c.2304T>C (p.Asp768=) single nucleotide variant not provided [RCV003714575] Chr2:172487787 [GRCh38]
Chr2:173352515 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2448C>T (p.Gly816=) single nucleotide variant not provided [RCV003882030] Chr2:172488171 [GRCh38]
Chr2:173352899 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1710+14A>C single nucleotide variant not provided [RCV003572467] Chr2:172484956 [GRCh38]
Chr2:173349684 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2779-8C>A single nucleotide variant not provided [RCV003691389] Chr2:172491213 [GRCh38]
Chr2:173355941 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2394G>C (p.Ser798=) single nucleotide variant not provided [RCV003663218] Chr2:172488030 [GRCh38]
Chr2:173352758 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1710+1G>A single nucleotide variant not provided [RCV003576303] Chr2:172484943 [GRCh38]
Chr2:173349671 [GRCh37]
Chr2:2q31.1
likely pathogenic
NM_000210.4(ITGA6):c.2580C>T (p.Ser860=) single nucleotide variant not provided [RCV003661826] Chr2:172489559 [GRCh38]
Chr2:173354287 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2880A>G (p.Thr960=) single nucleotide variant not provided [RCV003686806] Chr2:172491322 [GRCh38]
Chr2:173356050 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2564G>A (p.Trp855Ter) single nucleotide variant not provided [RCV003544182] Chr2:172489543 [GRCh38]
Chr2:173354271 [GRCh37]
Chr2:2q31.1
pathogenic
NM_000210.4(ITGA6):c.3159A>G (p.Thr1053=) single nucleotide variant not provided [RCV003875811] Chr2:172501816 [GRCh38]
Chr2:173366544 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1797A>G (p.Ser599=) single nucleotide variant not provided [RCV003686648] Chr2:172485207 [GRCh38]
Chr2:173349935 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2988+18T>C single nucleotide variant not provided [RCV003580381] Chr2:172491541 [GRCh38]
Chr2:173356269 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1881A>C (p.Gly627=) single nucleotide variant not provided [RCV003699676] Chr2:172487049 [GRCh38]
Chr2:173351777 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2988+9T>C single nucleotide variant not provided [RCV003834782] Chr2:172491532 [GRCh38]
Chr2:173356260 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2324+18C>T single nucleotide variant not provided [RCV003850397] Chr2:172487825 [GRCh38]
Chr2:173352553 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2130T>C (p.Tyr710=) single nucleotide variant not provided [RCV003697820] Chr2:172487423 [GRCh38]
Chr2:173352151 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1854+13_1854+16del deletion not provided [RCV003663571] Chr2:172485275..172485278 [GRCh38]
Chr2:173350003..173350006 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1710+17_1710+18insCT insertion not provided [RCV003700015] Chr2:172484959..172484960 [GRCh38]
Chr2:173349687..173349688 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1710+20_1710+21insTAAAA insertion not provided [RCV003700016] Chr2:172484961..172484962 [GRCh38]
Chr2:173349689..173349690 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1550-11A>T single nucleotide variant not provided [RCV003698161] Chr2:172484771 [GRCh38]
Chr2:173349499 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1855-5T>C single nucleotide variant not provided [RCV003674485] Chr2:172487018 [GRCh38]
Chr2:173351746 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1776C>T (p.Ser592=) single nucleotide variant not provided [RCV003836560] Chr2:172485186 [GRCh38]
Chr2:173349914 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.3115-20_3115-19del deletion not provided [RCV003560829] Chr2:172501751..172501752 [GRCh38]
Chr2:173366479..173366480 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2076C>T (p.Gly692=) single nucleotide variant not provided [RCV003548630] Chr2:172487369 [GRCh38]
Chr2:173352097 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2889+12G>C single nucleotide variant not provided [RCV003838459] Chr2:172491343 [GRCh38]
Chr2:173356071 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2961T>C (p.Asn987=) single nucleotide variant not provided [RCV003810893] Chr2:172491496 [GRCh38]
Chr2:173356224 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2161-9C>G single nucleotide variant not provided [RCV003718107] Chr2:172487538 [GRCh38]
Chr2:173352266 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.2325-10dup duplication not provided [RCV003835239] Chr2:172487947..172487948 [GRCh38]
Chr2:173352675..173352676 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.1855-12G>A single nucleotide variant not provided [RCV003832586] Chr2:172487011 [GRCh38]
Chr2:173351739 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2779-14C>A single nucleotide variant not provided [RCV003665881] Chr2:172491207 [GRCh38]
Chr2:173355935 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1855-13C>T single nucleotide variant not provided [RCV003817419] Chr2:172487010 [GRCh38]
Chr2:173351738 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2850T>C (p.Leu950=) single nucleotide variant not provided [RCV003703723] Chr2:172491292 [GRCh38]
Chr2:173356020 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2680-16del deletion not provided [RCV003834748] Chr2:172491008 [GRCh38]
Chr2:173355736 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2133T>C (p.Ser711=) single nucleotide variant not provided [RCV003580438] Chr2:172487426 [GRCh38]
Chr2:173352154 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2859C>T (p.Arg953=) single nucleotide variant not provided [RCV003856255] Chr2:172491301 [GRCh38]
Chr2:173356029 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1612C>T (p.Gln538Ter) single nucleotide variant not provided [RCV003673921] Chr2:172484844 [GRCh38]
Chr2:173349572 [GRCh37]
Chr2:2q31.1
pathogenic
NM_000210.4(ITGA6):c.2199G>A (p.Ser733=) single nucleotide variant not provided [RCV003726746] Chr2:172487585 [GRCh38]
Chr2:173352313 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2844G>A (p.Ala948=) single nucleotide variant not provided [RCV003560725] Chr2:172491286 [GRCh38]
Chr2:173356014 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2506-20T>A single nucleotide variant not provided [RCV003673130] Chr2:172489465 [GRCh38]
Chr2:173354193 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2874C>T (p.Asn958=) single nucleotide variant not provided [RCV003831983] Chr2:172491316 [GRCh38]
Chr2:173356044 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2988+8G>T single nucleotide variant not provided [RCV003723962] Chr2:172491531 [GRCh38]
Chr2:173356259 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1711-12C>A single nucleotide variant not provided [RCV003701172] Chr2:172485109 [GRCh38]
Chr2:173349837 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.3189A>G (p.Pro1063=) single nucleotide variant not provided [RCV003726299] Chr2:172501846 [GRCh38]
Chr2:173366574 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1855-4A>T single nucleotide variant not provided [RCV003664770] Chr2:172487019 [GRCh38]
Chr2:173351747 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2181T>G (p.Val727=) single nucleotide variant not provided [RCV003855722] Chr2:172487567 [GRCh38]
Chr2:173352295 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2103T>A (p.Ile701=) single nucleotide variant not provided [RCV003816762] Chr2:172487396 [GRCh38]
Chr2:173352124 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1971-5A>T single nucleotide variant not provided [RCV003673416] Chr2:172487259 [GRCh38]
Chr2:173351987 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2526T>C (p.Pro842=) single nucleotide variant not provided [RCV003666882] Chr2:172489505 [GRCh38]
Chr2:173354233 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2514C>T (p.Asn838=) single nucleotide variant not provided [RCV003670029] Chr2:172489493 [GRCh38]
Chr2:173354221 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2325-15C>A single nucleotide variant not provided [RCV003698719] Chr2:172487946 [GRCh38]
Chr2:173352674 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1970+9C>T single nucleotide variant not provided [RCV003817376] Chr2:172487147 [GRCh38]
Chr2:173351875 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2952T>C (p.Ala984=) single nucleotide variant not provided [RCV003701639] Chr2:172491487 [GRCh38]
Chr2:173356215 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2890-16C>G single nucleotide variant not provided [RCV003668505] Chr2:172491409 [GRCh38]
Chr2:173356137 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2779-9T>C single nucleotide variant not provided [RCV003838688] Chr2:172491212 [GRCh38]
Chr2:173355940 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1710+12A>C single nucleotide variant not provided [RCV003672560] Chr2:172484954 [GRCh38]
Chr2:173349682 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2680-12_2680-10del deletion not provided [RCV003666996] Chr2:172491010..172491012 [GRCh38]
Chr2:173355738..173355740 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2865G>A (p.Arg955=) single nucleotide variant not provided [RCV003700329] Chr2:172491307 [GRCh38]
Chr2:173356035 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.3057A>G (p.Leu1019=) single nucleotide variant not provided [RCV003836952] Chr2:172498043 [GRCh38]
Chr2:173362771 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1971-19G>A single nucleotide variant not provided [RCV003664936] Chr2:172487245 [GRCh38]
Chr2:173351973 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1848T>C (p.His616=) single nucleotide variant not provided [RCV003700001] Chr2:172485258 [GRCh38]
Chr2:173349986 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2538C>G (p.Leu846=) single nucleotide variant not provided [RCV003697471] Chr2:172489517 [GRCh38]
Chr2:173354245 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2181T>C (p.Val727=) single nucleotide variant not provided [RCV003667464] Chr2:172487567 [GRCh38]
Chr2:173352295 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1839G>A (p.Lys613=) single nucleotide variant not provided [RCV003664211] Chr2:172485249 [GRCh38]
Chr2:173349977 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2161-17G>T single nucleotide variant not provided [RCV003814241] Chr2:172487530 [GRCh38]
Chr2:173352258 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2779-9dup duplication not provided [RCV003700305] Chr2:172491207..172491208 [GRCh38]
Chr2:173355935..173355936 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.1884C>T (p.Asp628=) single nucleotide variant not provided [RCV003717502] Chr2:172487052 [GRCh38]
Chr2:173351780 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1855-4A>G single nucleotide variant not provided [RCV003724862] Chr2:172487019 [GRCh38]
Chr2:173351747 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2679+8G>T single nucleotide variant not provided [RCV003839119] Chr2:172489666 [GRCh38]
Chr2:173354394 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1550-17A>T single nucleotide variant not provided [RCV003672052] Chr2:172484765 [GRCh38]
Chr2:173349493 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2808C>T (p.Asn936=) single nucleotide variant not provided [RCV003579957] Chr2:172491250 [GRCh38]
Chr2:173355978 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1860C>T (p.His620=) single nucleotide variant not provided [RCV003717299] Chr2:172487028 [GRCh38]
Chr2:173351756 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1854+10T>C single nucleotide variant not provided [RCV003665754] Chr2:172485274 [GRCh38]
Chr2:173350002 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1970+10G>A single nucleotide variant not provided [RCV003727288] Chr2:172487148 [GRCh38]
Chr2:173351876 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2505+20C>T single nucleotide variant not provided [RCV003563076] Chr2:172488248 [GRCh38]
Chr2:173352976 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.3144T>C (p.Asp1048=) single nucleotide variant not provided [RCV003679749] Chr2:172501801 [GRCh38]
Chr2:173366529 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2989-5T>C single nucleotide variant not provided [RCV003729408] Chr2:172497970 [GRCh38]
Chr2:173362698 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2403-11del deletion not provided [RCV003857219] Chr2:172488110 [GRCh38]
Chr2:173352838 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.2170T>C (p.Leu724=) single nucleotide variant not provided [RCV003845560] Chr2:172487556 [GRCh38]
Chr2:173352284 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2245-3dup duplication ITGA6-related condition [RCV003956517]|not provided [RCV003730923] Chr2:172487718..172487719 [GRCh38]
Chr2:173352446..173352447 [GRCh37]
Chr2:2q31.1
benign|likely benign
NM_000210.4(ITGA6):c.1920T>C (p.Tyr640=) single nucleotide variant not provided [RCV003824249] Chr2:172487088 [GRCh38]
Chr2:173351816 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1890T>C (p.Asn630=) single nucleotide variant not provided [RCV003822765] Chr2:172487058 [GRCh38]
Chr2:173351786 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2505+13A>C single nucleotide variant not provided [RCV003842464] Chr2:172488241 [GRCh38]
Chr2:173352969 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2364A>G (p.Lys788=) single nucleotide variant not provided [RCV003708939] Chr2:172488000 [GRCh38]
Chr2:173352728 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2244+10G>A single nucleotide variant not provided [RCV003706865] Chr2:172487640 [GRCh38]
Chr2:173352368 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2679+16_2679+20del deletion not provided [RCV003846915] Chr2:172489673..172489677 [GRCh38]
Chr2:173354401..173354405 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2988+13C>G single nucleotide variant not provided [RCV003682278] Chr2:172491536 [GRCh38]
Chr2:173356264 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2244+11C>G single nucleotide variant not provided [RCV003821077] Chr2:172487641 [GRCh38]
Chr2:173352369 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2926C>A (p.Arg976=) single nucleotide variant not provided [RCV003821686] Chr2:172491461 [GRCh38]
Chr2:173356189 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2400G>C (p.Ser800=) single nucleotide variant not provided [RCV003683189] Chr2:172488036 [GRCh38]
Chr2:173352764 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2217C>T (p.Leu739=) single nucleotide variant not provided [RCV003551150] Chr2:172487603 [GRCh38]
Chr2:173352331 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2779-14C>T single nucleotide variant not provided [RCV003703730] Chr2:172491207 [GRCh38]
Chr2:173355935 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2679+7C>A single nucleotide variant not provided [RCV003730653] Chr2:172489665 [GRCh38]
Chr2:173354393 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2889+17A>G single nucleotide variant not provided [RCV003563043] Chr2:172491348 [GRCh38]
Chr2:173356076 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2073T>C (p.Asp691=) single nucleotide variant not provided [RCV003819963] Chr2:172487366 [GRCh38]
Chr2:173352094 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1854+18T>C single nucleotide variant not provided [RCV003568225] Chr2:172485282 [GRCh38]
Chr2:173350010 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1761G>A (p.Glu587=) single nucleotide variant not provided [RCV003677727] Chr2:172485171 [GRCh38]
Chr2:173349899 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2160+7A>G single nucleotide variant not provided [RCV003711742] Chr2:172487460 [GRCh38]
Chr2:173352188 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1557G>A (p.Val519=) single nucleotide variant not provided [RCV003682909] Chr2:172484789 [GRCh38]
Chr2:173349517 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2292C>T (p.Thr764=) single nucleotide variant not provided [RCV003861068] Chr2:172487775 [GRCh38]
Chr2:173352503 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1854+6TC[2] microsatellite not provided [RCV003707548] Chr2:172485270..172485271 [GRCh38]
Chr2:173349998..173349999 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2889+12del deletion not provided [RCV003682663] Chr2:172491342 [GRCh38]
Chr2:173356070 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1854+16T>A single nucleotide variant not provided [RCV003683865] Chr2:172485280 [GRCh38]
Chr2:173350008 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.3099G>A (p.Val1033=) single nucleotide variant not provided [RCV003865860] Chr2:172498085 [GRCh38]
Chr2:173362813 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.3108A>G (p.Leu1036=) single nucleotide variant not provided [RCV003733974] Chr2:172498094 [GRCh38]
Chr2:173362822 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2779-8C>T single nucleotide variant not provided [RCV003684802] Chr2:172491213 [GRCh38]
Chr2:173355941 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2031A>G (p.Thr677=) single nucleotide variant not provided [RCV003550922] Chr2:172487324 [GRCh38]
Chr2:173352052 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2205T>A (p.Ala735=) single nucleotide variant not provided [RCV003567303] Chr2:172487591 [GRCh38]
Chr2:173352319 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2100G>A (p.Leu700=) single nucleotide variant not provided [RCV003854188] Chr2:172487393 [GRCh38]
Chr2:173352121 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2778+18G>A single nucleotide variant not provided [RCV003683545] Chr2:172491140 [GRCh38]
Chr2:173355868 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2680-20T>A single nucleotide variant not provided [RCV003859042] Chr2:172491004 [GRCh38]
Chr2:173355732 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2769C>G (p.Tyr923Ter) single nucleotide variant not provided [RCV003564376] Chr2:172491113 [GRCh38]
Chr2:173355841 [GRCh37]
Chr2:2q31.1
pathogenic
NM_000210.4(ITGA6):c.2955C>T (p.Ala985=) single nucleotide variant not provided [RCV003729266] Chr2:172491490 [GRCh38]
Chr2:173356218 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2244+19T>C single nucleotide variant not provided [RCV003719033] Chr2:172487649 [GRCh38]
Chr2:173352377 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2889+10T>G single nucleotide variant not provided [RCV003719039] Chr2:172491341 [GRCh38]
Chr2:173356069 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2505+12C>G single nucleotide variant not provided [RCV003704634] Chr2:172488240 [GRCh38]
Chr2:173352968 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2679+21_2679+23del deletion not provided [RCV003679978] Chr2:172489678..172489680 [GRCh38]
Chr2:173354406..173354408 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.3009C>T (p.Pro1003=) single nucleotide variant not provided [RCV003685842] Chr2:172497995 [GRCh38]
Chr2:173362723 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1635G>A (p.Glu545=) single nucleotide variant ITGA6-related condition [RCV003966601]|not provided [RCV003722416] Chr2:172484867 [GRCh38]
Chr2:173349595 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2402+11_2402+16del microsatellite not provided [RCV003566132] Chr2:172488043..172488048 [GRCh38]
Chr2:173352771..173352776 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2506-2A>C single nucleotide variant not provided [RCV003721289] Chr2:172489483 [GRCh38]
Chr2:173354211 [GRCh37]
Chr2:2q31.1
likely pathogenic
NM_000210.4(ITGA6):c.2680-4dup duplication not provided [RCV003685747] Chr2:172491013..172491014 [GRCh38]
Chr2:173355741..173355742 [GRCh37]
Chr2:2q31.1
benign
NM_000210.4(ITGA6):c.3115-4G>C single nucleotide variant not provided [RCV003822462] Chr2:172501768 [GRCh38]
Chr2:173366496 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2680-18G>T single nucleotide variant not provided [RCV003845265] Chr2:172491006 [GRCh38]
Chr2:173355734 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1710+13G>T single nucleotide variant not provided [RCV003869950] Chr2:172484955 [GRCh38]
Chr2:173349683 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2394G>A (p.Ser798=) single nucleotide variant not provided [RCV003819950] Chr2:172488030 [GRCh38]
Chr2:173352758 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.3033G>A (p.Ser1011=) single nucleotide variant not provided [RCV003722182] Chr2:172498019 [GRCh38]
Chr2:173362747 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2403-12T>C single nucleotide variant not provided [RCV003685569] Chr2:172488114 [GRCh38]
Chr2:173352842 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2679+8G>A single nucleotide variant not provided [RCV003858896] Chr2:172489666 [GRCh38]
Chr2:173354394 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.3114+15G>A single nucleotide variant not provided [RCV003711610] Chr2:172498115 [GRCh38]
Chr2:173362843 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1590A>G (p.Lys530=) single nucleotide variant not provided [RCV003711642] Chr2:172484822 [GRCh38]
Chr2:173349550 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1755A>G (p.Ser585=) single nucleotide variant not provided [RCV003553071] Chr2:172485165 [GRCh38]
Chr2:173349893 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2989-16C>A single nucleotide variant not provided [RCV003710329] Chr2:172497959 [GRCh38]
Chr2:173362687 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2193T>C (p.Asn731=) single nucleotide variant not provided [RCV003710316] Chr2:172487579 [GRCh38]
Chr2:173352307 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.3219A>T (p.Ala1073=) single nucleotide variant not provided [RCV003857956] Chr2:172501876 [GRCh38]
Chr2:173366604 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2154T>C (p.Ala718=) single nucleotide variant not provided [RCV003553199] Chr2:172487447 [GRCh38]
Chr2:173352175 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2402+20A>C single nucleotide variant not provided [RCV003820704] Chr2:172488058 [GRCh38]
Chr2:173352786 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1550-7T>C single nucleotide variant not provided [RCV003705009] Chr2:172484775 [GRCh38]
Chr2:173349503 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.3021A>G (p.Val1007=) single nucleotide variant not provided [RCV003865828] Chr2:172498007 [GRCh38]
Chr2:173362735 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2052C>T (p.Asn684=) single nucleotide variant not provided [RCV003679738] Chr2:172487345 [GRCh38]
Chr2:173352073 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2394G>T (p.Ser798=) single nucleotide variant not provided [RCV003712157] Chr2:172488030 [GRCh38]
Chr2:173352758 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2211T>C (p.Cys737=) single nucleotide variant not provided [RCV003553283] Chr2:172487597 [GRCh38]
Chr2:173352325 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2061T>C (p.Asn687=) single nucleotide variant not provided [RCV003857178] Chr2:172487354 [GRCh38]
Chr2:173352082 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2829G>A (p.Gly943=) single nucleotide variant not provided [RCV003728662] Chr2:172491271 [GRCh38]
Chr2:173355999 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2161-17GT[2] microsatellite not provided [RCV003706491] Chr2:172487530..172487531 [GRCh38]
Chr2:173352258..173352259 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.3018T>C (p.Thr1006=) single nucleotide variant not provided [RCV003728938] Chr2:172498004 [GRCh38]
Chr2:173362732 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2779-14_2779-12del microsatellite not provided [RCV003821339] Chr2:172491202..172491204 [GRCh38]
Chr2:173355930..173355932 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2968C>T (p.Leu990=) single nucleotide variant not provided [RCV003861967] Chr2:172491503 [GRCh38]
Chr2:173356231 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2324+16A>C single nucleotide variant not provided [RCV003845045] Chr2:172487823 [GRCh38]
Chr2:173352551 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1932C>T (p.Thr644=) single nucleotide variant ITGA6-related condition [RCV003929376]|not provided [RCV003863255] Chr2:172487100 [GRCh38]
Chr2:173351828 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1854+11C>G single nucleotide variant not provided [RCV003550950] Chr2:172485275 [GRCh38]
Chr2:173350003 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1710+11dup duplication not provided [RCV003679566] Chr2:172484952..172484953 [GRCh38]
Chr2:173349680..173349681 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1855-20T>C single nucleotide variant not provided [RCV003859130] Chr2:172487003 [GRCh38]
Chr2:173351731 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2388T>G (p.Leu796=) single nucleotide variant not provided [RCV003731483] Chr2:172488024 [GRCh38]
Chr2:173352752 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.1996C>T (p.Leu666=) single nucleotide variant not provided [RCV003542150] Chr2:172487289 [GRCh38]
Chr2:173352017 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.3220T>C (p.Ter1074Gln) single nucleotide variant Epidermolysis bullosa, junctional 6, with pyloric atresia [RCV003993651] Chr2:172501877 [GRCh38]
Chr2:173366605 [GRCh37]
Chr2:2q31.1
likely benign
NM_000210.4(ITGA6):c.2679+6T>G single nucleotide variant ITGA6-related condition [RCV003911435] Chr2:172489664 [GRCh38]
Chr2:173354392 [GRCh37]
Chr2:2q31.1
likely benign
NM_002610.5(PDK1):c.166C>T (p.Pro56Ser) single nucleotide variant not specified [RCV004503361] Chr2:172556316 [GRCh38]
Chr2:173421044 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_002610.5(PDK1):c.50C>A (p.Pro17Gln) single nucleotide variant not specified [RCV004503366] Chr2:172556200 [GRCh38]
Chr2:173420928 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_002610.5(PDK1):c.83T>G (p.Phe28Cys) single nucleotide variant not specified [RCV004503368] Chr2:172556233 [GRCh38]
Chr2:173420961 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2578A>C (p.Ser860Arg) single nucleotide variant Inborn genetic diseases [RCV004405632] Chr2:172489557 [GRCh38]
Chr2:173354285 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.2765A>C (p.Lys922Thr) single nucleotide variant Inborn genetic diseases [RCV004405633] Chr2:172491109 [GRCh38]
Chr2:173355837 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_000210.4(ITGA6):c.3001G>A (p.Val1001Met) single nucleotide variant Inborn genetic diseases [RCV004405634] Chr2:172497987 [GRCh38]
Chr2:173362715 [GRCh37]
Chr2:2q31.1
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:461
Count of miRNA genes:388
Interacting mature miRNAs:405
Transcripts:ENST00000416080, ENST00000436922, ENST00000442417, ENST00000444919, ENST00000450443
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 6 3 3 53 311 3 287 28 6 3 6 287
Low 2273 2631 1286 354 1839 197 3505 1678 2762 390 1393 1554 170 1 1196 1990 5 2
Below cutoff 159 355 437 264 55 265 539 511 682 29 37 49 1 2 510

Sequence


RefSeq Acc Id: ENST00000416080
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2172,509,029 - 172,512,510 (-)Ensembl
RefSeq Acc Id: ENST00000436922
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2172,555,426 - 172,556,407 (-)Ensembl
RefSeq Acc Id: ENST00000442417
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2172,480,840 - 172,556,529 (-)Ensembl
RefSeq Acc Id: ENST00000444919
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2172,552,615 - 172,556,408 (-)Ensembl
RefSeq Acc Id: ENST00000450443
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2172,503,439 - 172,556,596 (-)Ensembl
RefSeq Acc Id: NR_186177
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382172,480,732 - 172,556,464 (-)NCBI
T2T-CHM13v2.02172,966,980 - 173,042,716 (-)NCBI
RefSeq Acc Id: NR_186178
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382172,503,308 - 172,556,464 (-)NCBI
T2T-CHM13v2.02172,989,556 - 173,042,716 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC PDK1-AS1 COSMIC
Ensembl Genes ENSG00000225205 Ensembl
  ENSG00000232788 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000442417 ENTREZGENE
  ENST00000450443 ENTREZGENE
GTEx ENSG00000225205 GTEx
  ENSG00000232788 GTEx
HGNC ID HGNC:40441 ENTREZGENE
Human Proteome Map PDK1-AS1 Human Proteome Map
NCBI Gene LOC124900513 ENTREZGENE
RNAcentral URS00026A1CDA RNACentral
  URS00026A20FE RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-15 PDK1-AS1  PDK1 and ITGA6 antisense RNA 1  PDK1-AS1  PDK1 and ITGA6 antisense RNA 1  Data merged from RGD:150573775 737654 PROVISIONAL
2021-12-06 PDK1-AS1  PDK1 and ITGA6 antisense RNA 1  AC078883.1  novel transcript  Symbol and/or name change 19259463 PROVISIONAL