AC068279.1 (novel pseudogene) - Rat Genome Database

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Gene: AC068279.1 (novel pseudogene) Homo sapiens
Analyze
Symbol: AC068279.1
Name: novel pseudogene
RGD ID: 16553019
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl287,379,880 - 87,380,767 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:349
Count of miRNA genes:316
Interacting mature miRNAs:342
Transcripts:ENST00000393756, ENST00000444323
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 18 3 1 4
Low 149 9 155 45 170 49 94 18 135 149 229 318 6 8 26
Below cutoff 680 544 662 194 392 157 1180 499 1455 125 626 510 39 337 709 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000444323
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl287,379,880 - 87,380,767 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC068279.1 COSMIC
Ensembl Genes ENSG00000224881 Ensembl
GTEx ENSG00000224881 GTEx
Human Proteome Map AC068279.1 Human Proteome Map