CR769776.1 (novel zinc finger pseudogene) - Rat Genome Database

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Gene: CR769776.1 (novel zinc finger pseudogene) Homo sapiens
Analyze
Symbol: CR769776.1
Name: novel zinc finger pseudogene
RGD ID: 16552991
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: LOC100419691; zinc finger protein 114 pseudogene
Related Functional Gene: ZNF114  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38964,473,037 - 64,473,746 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl964,473,040 - 64,473,826 (-)EnsemblGRCh38hg38GRCh38
GRCh37969,485,455 - 69,486,164 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map9q13NCBI
CHM1_1969,638,542 - 69,639,250 (-)NCBICHM1_1
T2T-CHM13v2.0942,948,879 - 42,949,587 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:553
Count of miRNA genes:442
Interacting mature miRNAs:464
Transcripts:ENST00000414341
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 1 4 2
Below cutoff 104 51 98 30 31 24 127 56 286 26 180 43 6 83 61

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000441254
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl964,473,040 - 64,473,826 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CR769776.1 COSMIC
Ensembl Genes ENSG00000224762 Ensembl, ENTREZGENE
GTEx ENSG00000224762 GTEx
Human Proteome Map CR769776.1 Human Proteome Map
NCBI Gene LOC100419691 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 CR769776.1  novel zinc finger pseudogene  LOC100419691  zinc finger protein 114 pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100419691  zinc finger protein 114 pseudogene  CR769776.1  novel zinc finger pseudogene  Symbol and/or name change 5135510 APPROVED