LOC124903421 (small nucleolar RNA SNORD113/SNORD114 family) - Rat Genome Database

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Gene: LOC124903421 (small nucleolar RNA SNORD113/SNORD114 family) Homo sapiens
Analyze
Symbol: LOC124903421 (Ensembl: AL132709.6)
Name: small nucleolar RNA SNORD113/SNORD114 family
RGD ID: 16552517
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AL132709.6
RGD Orthologs
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814100,998,467 - 100,998,541 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14100,998,467 - 100,998,541 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map14q32.31NCBI
T2T-CHM13v2.01495,233,878 - 95,233,952 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC124903421
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814100,998,467 - 100,998,541 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14100,998,467 - 100,998,541 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map14q32.31NCBI
T2T-CHM13v2.01495,233,878 - 95,233,952 (+)NCBIT2T-CHM13v2.0
LOC119873128
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha868,749,789 - 68,749,862 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0869,513,421 - 69,513,494 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1869,176,986 - 69,177,059 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0869,243,077 - 69,243,150 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0869,641,063 - 69,641,136 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:61
Count of miRNA genes:61
Interacting mature miRNAs:61
Transcripts:ENST00000410253
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system appendage entire extraembryonic component
High
Medium 1 1 1 3 1 3 3 7 3 2
Low 1 1 29 22 12 22 17 19 40 4 23 23 1 1
Below cutoff 1 1 1 1 1 2 8 1 2 5 6

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000410253
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl14100,998,467 - 100,998,541 (+)Ensembl
RefSeq Acc Id: XR_007064399
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,998,467 - 100,998,541 (+)NCBI
RefSeq Acc Id: XR_007085193
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01495,233,878 - 95,233,952 (+)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LOC124903421 COSMIC
Ensembl Genes ENSG00000222185 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000410253 ENTREZGENE
GTEx ENSG00000222185 GTEx
Human Proteome Map LOC124903421 Human Proteome Map
NCBI Gene LOC124903421 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-12 LOC124903421  small nucleolar RNA SNORD113/SNORD114 family  AL132709.6    Symbol and/or name change 5135510 APPROVED