AL603914.1 (ribosomal protein L21 (RPL21) pseudogene) - Rat Genome Database

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Gene: AL603914.1 (ribosomal protein L21 (RPL21) pseudogene) Homo sapiens
Analyze
Symbol: AL603914.1
Name: ribosomal protein L21 (RPL21) pseudogene
RGD ID: 16552374
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl6110,706,362 - 110,706,882 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:245
Count of miRNA genes:236
Interacting mature miRNAs:244
Transcripts:ENST00000401964
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 3 1
Low 16 13 22 15 115 15 34 15 45 19 63 26 2 15 1
Below cutoff 99 129 76 25 180 25 246 54 295 46 167 90 4 48 123 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000401964
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6110,706,362 - 110,706,882 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL603914.1 COSMIC
Ensembl Genes ENSG00000219150 Ensembl
GTEx ENSG00000219150 GTEx
Human Proteome Map AL603914.1 Human Proteome Map