AL135903.1 (karyopherin alpha 5 (importin alpha 6) (KPNA5) pseudogene) - Rat Genome Database

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Gene: AL135903.1 (karyopherin alpha 5 (importin alpha 6) (KPNA5) pseudogene) Homo sapiens
Analyze
Symbol: AL135903.1
Name: karyopherin alpha 5 (importin alpha 6) (KPNA5) pseudogene
RGD ID: 16552274
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: karyopherin subunit alpha 3 pseudogene; LOC100421093
Related Functional Gene: KPNA3  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38685,286,339 - 85,290,753 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl685,286,076 - 85,290,849 (+)EnsemblGRCh38hg38GRCh38
GRCh37685,996,057 - 86,000,471 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6q14.3NCBI
HuRef683,219,721 - 83,224,134 (+)NCBIHuRef
CHM1_1686,093,873 - 86,098,286 (+)NCBICHM1_1
T2T-CHM13v2.0686,503,765 - 86,508,179 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in AL135903.1
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:34
Interacting mature miRNAs:35
Transcripts:ENST00000402742
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 33 5 2 2 43 2 34 8 28 19 92 84 4 1
Below cutoff 793 1064 488 186 598 140 1931 1042 1135 169 688 625 54 419 1315 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000402742
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl685,286,076 - 85,290,849 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL135903.1 COSMIC
Ensembl Genes ENSG00000217060 Ensembl, ENTREZGENE
GTEx ENSG00000217060 GTEx
Human Proteome Map AL135903.1 Human Proteome Map
NCBI Gene LOC100421093 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AL135903.1  karyopherin alpha 5 (importin alpha 6) (KPNA5) pseudogene  LOC100421093  karyopherin subunit alpha 3 pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100421093  karyopherin subunit alpha 3 pseudogene  AL135903.1  karyopherin alpha 5 (importin alpha 6) (KPNA5) pseudogene  Symbol and/or name change 5135510 APPROVED