AC025262.1 (novel transcript) - Rat Genome Database

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Gene: AC025262.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC025262.1
Name: novel transcript
RGD ID: 16552188
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1264,759,521 - 64,779,318 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:144
Count of miRNA genes:116
Interacting mature miRNAs:124
Transcripts:ENST00000434563, ENST00000594966
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 23 27 101 6 89 6 54 22 137 28 386 111 2 1 14 1
Below cutoff 811 1124 884 141 601 90 1191 495 2387 220 713 835 58 320 809 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000434563
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1264,759,521 - 64,779,318 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC025262.1 COSMIC
Ensembl Genes ENSG00000215159 Ensembl
GTEx ENSG00000215159 GTEx
Human Proteome Map AC025262.1 Human Proteome Map