LOC124900207 (small nucleolar RNA SNORA51) - Rat Genome Database

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Gene: LOC124900207 (small nucleolar RNA SNORA51) Homo sapiens
Analyze
No known orthologs.
Symbol: LOC124900207 (Ensembl: AC008650.1)
Name: small nucleolar RNA SNORA51
RGD ID: 16551753
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AC008650.1
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385110,684,794 - 110,684,927 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5110,684,794 - 110,684,927 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map5q22.1NCBI
T2T-CHM13v2.05111,195,332 - 111,195,465 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:30
Interacting mature miRNAs:30
Transcripts:ENST00000384448
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 8 6 29 5 17 4 18 3 57 11 31 19 1 2 10
Below cutoff 42 34 113 12 34 8 78 35 253 19 73 83 5 16 55

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000384448
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5110,684,794 - 110,684,927 (-)Ensembl
RefSeq Acc Id: XR_007059156
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385110,684,794 - 110,684,927 (-)NCBI
RefSeq Acc Id: XR_007076350
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05111,195,332 - 111,195,465 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LOC124900207 COSMIC
Ensembl Genes ENSG00000207177 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000384448 ENTREZGENE
GTEx ENSG00000207177 GTEx
Human Proteome Map LOC124900207 Human Proteome Map
NCBI Gene LOC124900207 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-12 LOC124900207  small nucleolar RNA SNORA51  AC008650.1    Symbol and/or name change 5135510 APPROVED