LOC124904808 (small nucleolar RNA SNORA2/SNORA34 family) - Rat Genome Database

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Gene: LOC124904808 (small nucleolar RNA SNORA2/SNORA34 family) Homo sapiens
Analyze
Symbol: LOC124904808 (Ensembl: AL359273.1)
Name: small nucleolar RNA SNORA2/SNORA34 family
RGD ID: 16551094
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AL359273.1
RGD Orthologs
Mouse
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38184,277,321 - 84,277,457 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl184,277,321 - 84,277,457 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map1p31.1NCBI
T2T-CHM13v2.0184,117,769 - 84,117,905 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC124904808
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38184,277,321 - 84,277,457 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl184,277,321 - 84,277,457 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map1p31.1NCBI
T2T-CHM13v2.0184,117,769 - 84,117,905 (+)NCBIT2T-CHM13v2.0
Gm25896
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391687,215,797 - 87,215,932 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1687,215,797 - 87,215,932 (-)EnsemblGRCm39 Ensembl
GRCm381687,418,909 - 87,419,044 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1687,418,909 - 87,419,044 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map16C3.3NCBI
LOC120101251
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,081,904 - 176,082,039 (+)NCBIGRCr8
mRatBN7.22173,784,077 - 173,784,212 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2173,784,077 - 173,784,212 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2187,687,334 - 187,687,469 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q34NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:30
Count of miRNA genes:30
Interacting mature miRNAs:30
Transcripts:ENST00000363089
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 57 1 277 7 12 3 20 6 27 9 214 285 4 2 4
Below cutoff 196 16 174 15 41 1 80 44 231 12 119 177 14 12 52

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000363089
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl184,277,321 - 84,277,457 (+)Ensembl
RefSeq Acc Id: XR_007067394
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38184,277,321 - 84,277,457 (+)NCBI
RefSeq Acc Id: XR_007071462
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0184,117,769 - 84,117,905 (+)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LOC124904808 COSMIC
Ensembl Genes ENSG00000199959 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000363089 ENTREZGENE
GTEx ENSG00000199959 GTEx
Human Proteome Map LOC124904808 Human Proteome Map
NCBI Gene LOC124904808 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-12 LOC124904808  small nucleolar RNA SNORA2/SNORA34 family  AL359273.1    Symbol and/or name change 5135510 APPROVED