EEF1DP5 (eukaryotic translation elongation factor 1 delta pseudogene 5) - Rat Genome Database

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Gene: EEF1DP5 (eukaryotic translation elongation factor 1 delta pseudogene 5) Homo sapiens
Analyze
Symbol: EEF1DP5
Name: eukaryotic translation elongation factor 1 delta pseudogene 5
RGD ID: 1626265
HGNC Page HGNC:33524
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: EEF1D  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386128,580,065 - 128,580,952 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6128,580,113 - 128,580,884 (-)EnsemblGRCh38hg38GRCh38
GRCh376128,901,210 - 128,902,097 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366128,943,386 - 128,943,601 (-)NCBINCBI36Build 36hg18NCBI36
Celera6129,647,729 - 129,648,423 (-)NCBICelera
Cytogenetic Map6q22.33NCBI
HuRef6126,482,430 - 126,483,124 (-)NCBIHuRef
CHM1_16129,165,811 - 129,166,505 (-)NCBICHM1_1
T2T-CHM13v2.06129,773,207 - 129,774,094 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:85
Interacting mature miRNAs:85
Transcripts:ENST00000431410
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 2
Low 11 5 8 5 32 5 29 5 11 19 49 30 1 2 8
Below cutoff 581 773 373 120 316 65 1168 569 604 60 534 391 58 294 745 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000431410
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6128,580,113 - 128,580,884 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC EEF1DP5 COSMIC
Ensembl Genes ENSG00000213130 Ensembl, ENTREZGENE
GTEx ENSG00000213130 GTEx
HGNC ID HGNC:33524 ENTREZGENE
Human Proteome Map EEF1DP5 Human Proteome Map
NCBI Gene 442258 ENTREZGENE