ISCA1P1 (iron-sulfur cluster assembly 1 pseudogene 1) - Rat Genome Database

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Gene: ISCA1P1 (iron-sulfur cluster assembly 1 pseudogene 1) Homo sapiens
Analyze
Symbol: ISCA1P1
Name: iron-sulfur cluster assembly 1 pseudogene 1
RGD ID: 1625835
HGNC Page HGNC:33263
Description: INTERACTS WITH benzo[a]pyrene
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ISCA1L
Related Functional Gene: ISCA1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38562,775,369 - 62,777,343 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl562,776,877 - 62,777,263 (-)EnsemblGRCh38hg38GRCh38
GRCh37562,071,196 - 62,073,170 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36562,106,953 - 62,108,926 (-)NCBINCBI36Build 36hg18NCBI36
Celera559,068,136 - 59,070,104 (-)NCBICelera
Cytogenetic Map5q12.1NCBI
HuRef559,027,046 - 59,029,014 (-)NCBIHuRef
CHM1_1562,070,868 - 62,072,836 (-)NCBICHM1_1
T2T-CHM13v2.0563,595,051 - 63,597,025 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:20379614   PMID:20877624   PMID:21294900   PMID:23897914   PMID:24204828  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:258
Count of miRNA genes:125
Interacting mature miRNAs:128
Transcripts:ENST00000426679, ENST00000542811
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 6 8 5 19 5 14 1 10 45 29 59
Low 334 392 409 182 479 174 966 465 520 238 511 482 20 184 530 4
Below cutoff 1123 1454 740 213 554 137 1963 1120 1845 82 486 564 76 663 1351

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000426679
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl562,776,877 - 62,777,263 (-)Ensembl
RefSeq Acc Id: NM_001080540
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 36562,106,953 - 62,108,926 (-)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC ISCA1P1 COSMIC
Ensembl Genes ENSG00000217416 Ensembl
GTEx ENSG00000217416 GTEx
HGNC ID HGNC:33263 ENTREZGENE
Human Proteome Map ISCA1P1 Human Proteome Map
NCBI Gene 389293 ENTREZGENE
PharmGKB PA162392314 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-13 ISCA1P1  iron-sulfur cluster assembly 1 pseudogene 1    iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 ISCA1P1  iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 1  ISCA1L  iron-sulfur cluster assembly 1 homolog (S. cerevisiae)-like  Symbol and/or name change 5135510 APPROVED