Zfp783 (zinc finger protein 783) - Rat Genome Database

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Gene: Zfp783 (zinc finger protein 783) Mus musculus
Analyze
Symbol: Zfp783
Name: zinc finger protein 783
RGD ID: 1623779
MGI Page MGI
Description: INTERACTS WITH 4,4'-sulfonyldiphenol; bisphenol A; dibutyl phthalate
Type: ncrna (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: A230106D06Rik; ENSMUSG00000072653; Gm20494
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39647,920,109 - 47,931,483 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl647,920,067 - 47,932,847 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl647,922,363 - 47,929,076 (+)EnsemblGRCm39 Ensembl
GRCm38647,943,175 - 47,954,549 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl647,943,171 - 47,955,913 (+)EnsemblGRCm38mm10GRCm38
MGSCv37647,893,174 - 47,904,548 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36647,893,170 - 47,903,153 (+)NCBIMGSCv36mm8
Celera648,473,620 - 48,484,991 (+)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map622.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Zfp783
346 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2117
Count of miRNA genes:706
Interacting mature miRNAs:890
Transcripts:ENSMUST00000095946, ENSMUST00000114588, ENSMUST00000130463, ENSMUST00000130490, ENSMUST00000132381, ENSMUST00000135828, ENSMUST00000144782, ENSMUST00000154259, ENSMUST00000156767, ENSMUST00000173129, ENSMUST00000175808
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3170349965703611Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63267698066676980Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63387226167872400Mouse
11252142Mom12_mModifier of Min 12 (mouse)63387226167872400Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63627333270273435Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63644845670448576Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3674146370741463Mouse
14746995Manh60_mmandible shape 60 (mouse)63720266271202662Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64086823071356155Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64157698575576985Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64209335876093500Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64209335876093500Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64209335876093500Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64209335876093500Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64380374777788506Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64380374777788506Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64380374777788506Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64380374777788506Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64380374777788506Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64380374777788506Mouse
10043885Cia6c_mcollagen induced arthritis QTL 6c (mouse)Not determined64444280571096451Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64529099387403016Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse

Markers in Region
27.MMHAP70FRA12.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38647,945,283 - 47,945,446UniSTSGRCm38
MGSCv37647,895,282 - 47,895,445UniSTSGRCm37
Celera648,475,728 - 48,475,891UniSTS
Cytogenetic Map6B2.3UniSTS
Whitehead_YAC6 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000095946
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,922,363 - 47,929,076 (+)Ensembl
GRCm38.p6 Ensembl647,945,429 - 47,952,142 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114588
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,129 - 47,925,080 (+)Ensembl
GRCm38.p6 Ensembl647,943,195 - 47,948,146 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130463
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,922,823 - 47,932,847 (+)Ensembl
GRCm38.p6 Ensembl647,945,889 - 47,955,913 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130490
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,105 - 47,931,483 (+)Ensembl
GRCm38.p6 Ensembl647,943,171 - 47,954,549 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132381
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,923,605 - 47,930,508 (+)Ensembl
GRCm38.p6 Ensembl647,946,671 - 47,953,574 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135828
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,922,836 - 47,930,509 (+)Ensembl
GRCm38.p6 Ensembl647,945,902 - 47,953,575 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,137 - 47,925,097 (+)Ensembl
GRCm38.p6 Ensembl647,943,203 - 47,948,163 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154259
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,119 - 47,930,087 (+)Ensembl
GRCm38.p6 Ensembl647,943,208 - 47,953,153 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156767
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,922,431 - 47,928,268 (+)Ensembl
GRCm38.p6 Ensembl647,945,497 - 47,951,334 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173129
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,184 - 47,930,508 (+)Ensembl
GRCm38.p6 Ensembl647,943,250 - 47,953,574 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175808
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,129 - 47,930,088 (+)Ensembl
GRCm38.p6 Ensembl647,943,208 - 47,946,724 (+)Ensembl
RefSeq Acc Id: ENSMUST00000212438
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,288 - 47,925,953 (+)Ensembl
GRCm38.p6 Ensembl647,943,354 - 47,949,019 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241383
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,097 - 47,930,086 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243097
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,137 - 47,930,088 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243589
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,129 - 47,930,088 (+)Ensembl
RefSeq Acc Id: ENSMUST00000244415
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,093 - 47,930,086 (+)Ensembl
RefSeq Acc Id: ENSMUST00000244448
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,137 - 47,930,086 (+)Ensembl
RefSeq Acc Id: ENSMUST00000244476
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,127 - 47,930,088 (+)Ensembl
RefSeq Acc Id: ENSMUST00000244599
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,109 - 47,930,088 (+)Ensembl
RefSeq Acc Id: ENSMUST00000244865
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,127 - 47,930,088 (+)Ensembl
RefSeq Acc Id: ENSMUST00000244901
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,129 - 47,930,088 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245074
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,129 - 47,930,088 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245393
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,137 - 47,930,088 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245801
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,097 - 47,930,086 (+)Ensembl
RefSeq Acc Id: ENSMUST00000246095
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,137 - 47,930,088 (+)Ensembl
RefSeq Acc Id: ENSMUST00000246356
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl647,920,067 - 47,930,088 (+)Ensembl
RefSeq Acc Id: NR_027963
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39647,920,109 - 47,931,483 (+)NCBI
GRCm38647,943,175 - 47,954,549 (+)ENTREZGENE
MGSCv37647,893,174 - 47,904,548 (+)RGD
Celera648,473,620 - 48,484,991 (+)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAD90313 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
Protein Domains
C2H2-type

Promoters
RGD ID:6839261
Promoter ID:MM_KWN:45880
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000114588,   OTTMUST00000053261,   OTTMUST00000053264,   OTTMUST00000053265,   UC009BTP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36647,893,071 - 47,893,571 (+)MPROMDB
RGD ID:6889582
Promoter ID:EPDNEW_M8242
Type:initiation region
Name:Zfp783_1
Description:Mus musculus zinc finger protein 783 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38647,943,174 - 47,943,234EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000072653 Ensembl
  ENSMUSG00000121486 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000130490 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
MGD MGI:3040704 ENTREZGENE
NCBI Gene 232785 ENTREZGENE
PANTHER FI01424P-RELATED UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
PhenoGen Zfp783 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RNAcentral URS000075AA78 RNACentral
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt Q5DTI5_MOUSE UniProtKB/TrEMBL