Rps12-ps7 (ribosomal protein S12, pseudogene 7) - Rat Genome Database

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Gene: Rps12-ps7 (ribosomal protein S12, pseudogene 7) Mus musculus
Analyze
Symbol: Rps12-ps7
Name: ribosomal protein S12, pseudogene 7
RGD ID: 1622492
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG667027; Gm8427; Rps12-ps
Related Functional Gene: Rps12  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X149,948,634 - 149,949,135 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX149,948,721 - 149,949,105 (+)EnsemblGRCm39 Ensembl
GRCm38X151,165,638 - 151,166,139 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX151,165,725 - 151,166,109 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X147,600,208 - 147,600,670 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X146,506,441 - 146,506,773 (+)NCBIMGSCv36mm8
CeleraX133,236,579 - 133,237,041 (-)NCBICelera
Cytogenetic MapXF3NCBI
cM MapX68.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Rps12-ps7
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:37
Interacting mature miRNAs:38
Transcripts:ENSMUST00000117169
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
1301276Tswt_mtestis weight (mouse)Not determinedX138376411150789338Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse
12738421Lfibq17_mliver fibrosis QTL 17 (mouse)X148148453164945064Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_006043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL732420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000117169
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX149,948,721 - 149,949,105 (+)Ensembl
GRCm38.p6 EnsemblX151,165,725 - 151,166,109 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000081625 Ensembl
MGD MGI:3648636 ENTREZGENE
NCBI Gene 667027 ENTREZGENE
PhenoGen Rps12-ps7 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Rps12-ps7  ribosomal protein S12, pseudogene 7  Gm8427  predicted gene 8427  Symbol and/or name change 5135510 APPROVED