Or4x5-ps1 (olfactory receptor family 4 subfamily X member 5, pseudogene 1) - Rat Genome Database

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Gene: Or4x5-ps1 (olfactory receptor family 4 subfamily X member 5, pseudogene 1) Mus musculus
Analyze
Symbol: Or4x5-ps1
Name: olfactory receptor family 4 subfamily X member 5, pseudogene 1
RGD ID: 1622001
MGI Page MGI
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: MOR229; MOR229-1; olfactory receptor 1268, pseudogene 1; Olfr1268-ps1
RGD Orthologs
Human
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39289,940,803 - 89,941,731 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl289,939,439 - 89,945,367 (-)EnsemblGRCm39 Ensembl
GRCm38290,110,459 - 90,111,387 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl290,109,095 - 90,115,023 (-)EnsemblGRCm38mm10GRCm38
MGSCv37289,950,616 - 89,951,544 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36289,911,298 - 89,912,226 (-)NCBIMGSCv36mm8
Celera291,647,186 - 91,648,114 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:11802173   PMID:11875048   PMID:14611657   PMID:32295537  


Genomics

Comparative Map Data
Or4x5-ps1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39289,940,803 - 89,941,731 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl289,939,439 - 89,945,367 (-)EnsemblGRCm39 Ensembl
GRCm38290,110,459 - 90,111,387 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl290,109,095 - 90,115,023 (-)EnsemblGRCm38mm10GRCm38
MGSCv37289,950,616 - 89,951,544 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36289,911,298 - 89,912,226 (-)NCBIMGSCv36mm8
Celera291,647,186 - 91,648,114 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.14NCBI
OR4X1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381148,263,861 - 48,264,778 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1148,263,861 - 48,264,778 (+)EnsemblGRCh38hg38GRCh38
GRCh371148,285,413 - 48,286,330 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361148,241,989 - 48,242,906 (+)NCBINCBI36Build 36hg18NCBI36
Build 341148,241,988 - 48,242,906NCBI
Celera1148,435,389 - 48,436,306 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1147,996,230 - 47,997,147 (+)NCBIHuRef
CHM1_11148,284,909 - 48,285,823 (+)NCBICHM1_1
T2T-CHM13v2.01148,433,351 - 48,434,265 (+)NCBIT2T-CHM13v2.0
Or4x5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8396,623,021 - 96,623,950 (-)NCBIGRCr8
mRatBN7.2376,167,152 - 76,168,081 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl376,166,415 - 76,173,027 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx379,658,262 - 79,659,191 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0388,256,791 - 88,257,720 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0386,101,166 - 86,102,095 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0379,009,434 - 79,010,363 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl379,009,434 - 79,010,363 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0385,724,083 - 85,725,012 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4374,570,919 - 74,571,848 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1374,467,290 - 74,468,220 (-)NCBI
Celera375,409,524 - 75,410,453 (-)NCBICelera
Cytogenetic Map3q24NCBI
LOC100993343
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2950,479,380 - 50,480,297 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11150,499,285 - 50,500,202 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01148,224,439 - 48,225,356 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11148,765,989 - 48,766,906 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1148,765,989 - 48,766,906 (+)Ensemblpanpan1.1panPan2
OR4X15P
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11841,471,493 - 41,472,230 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.01842,126,205 - 42,126,942 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11841,604,766 - 41,605,503 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01841,168,035 - 41,168,772 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01841,897,319 - 41,898,056 (-)NCBIUU_Cfam_GSD_1.0
LOC100155381
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1778,966,748 - 78,967,930 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27133,581,034 - 133,581,972 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC119624253
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_023666038114,366,041 - 114,367,405 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Or4x5-ps1
29 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:115
Interacting mature miRNAs:118
Transcripts:ENSMUST00000117787
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
4141657Mohg1_mmodifier of hg 1 (mouse)Not determined276678758103095823Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284008488118008593Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
1301897Scc2_mcolon tumor susceptibility 2 (mouse)Not determined28572426990410991Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000117787   ⟹   ENSMUSP00000150064
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl289,939,439 - 89,945,367 (-)Ensembl
GRCm38.p6 Ensembl290,109,095 - 90,115,023 (-)Ensembl
Protein Sequences
GenBank Protein AAL60772 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000150064   ⟸   ENSMUST00000117787


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000082574 Ensembl
MGD MGI:3031102 ENTREZGENE
NCBI Gene 258981 ENTREZGENE
PhenoGen Or4x5-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or4x5-ps1  olfactory receptor family 4 subfamily X member 5, pseudogene 1  Olfr1268-ps1  olfactory receptor 1268, pseudogene 1  Symbol and/or name change 5135510 APPROVED