Gm7808 (predicted pseudogene 7808) - Rat Genome Database

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Gene: Gm7808 (predicted pseudogene 7808) Mus musculus
Analyze
Symbol: Gm7808
Name: predicted pseudogene 7808
RGD ID: 1621748
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG665823
Related Functional Gene: Uba52  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39919,839,111 - 19,839,619 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl919,839,192 - 19,839,578 (-)EnsemblGRCm39 Ensembl
GRCm38919,927,815 - 19,928,323 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl919,927,896 - 19,928,282 (-)EnsemblGRCm38mm10GRCm38
MGSCv37919,732,274 - 19,732,767 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36919,678,205 - 19,678,736 (-)NCBIMGSCv36mm8
Celera917,208,527 - 17,209,020 (-)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm7808
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:108
Interacting mature miRNAs:109
Transcripts:ENSMUST00000082002
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142326Tgq19_mtriglyceride QTL 19 (mouse)Not determined121060750Mouse
1300899Chol6_mcholesterol 6 (mouse)Not determined9129902913Mouse
13434920Dcollq1_mdifferential colonization level QTL 1 (mouse)9130341840Mouse
35673312Ari7_mantibody response to influenza 7, day 45, IgG3 (mouse)9780000122211296Mouse
1300849Sles4_msystemic lupus erythmatosus suppressor 4 (mouse)Not determined9910756237306370Mouse
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000082002
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl919,839,192 - 19,839,578 (-)Ensembl
GRCm38.p6 Ensembl919,927,896 - 19,928,282 (-)Ensembl
Protein Sequences
GenBank Protein EDL25081 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:6844604
Promoter ID:MM_KWN:56494
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:XM_989375_GM7808
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36919,732,466 - 19,732,966 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000091460 Ensembl
MGD MGI:3643360 ENTREZGENE
NCBI Gene 665823 ENTREZGENE
PhenoGen Gm7808 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm7808  predicted pseudogene 7808  Gm7808  predicted gene 7808  Symbol and/or name change 5135510 APPROVED