Rnu6-ps1 (U6 small nuclear RNA, pseudogene 1) - Rat Genome Database

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Gene: Rnu6-ps1 (U6 small nuclear RNA, pseudogene 1) Mus musculus
Analyze
Symbol: Rnu6-ps1
Name: U6 small nuclear RNA, pseudogene 1
RGD ID: 1621586
MGI Page MGI
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: Gm24705
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,818,533 - 54,818,838 (+)NCBIGRCm39GRCm39mm39
GRCm381454,581,076 - 54,581,381 (+)NCBIGRCm38GRCm38mm10GRCm38
Cytogenetic Map14C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:6171774  


Genomics

Comparative Map Data
Rnu6-ps1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,818,533 - 54,818,838 (+)NCBIGRCm39GRCm39mm39
GRCm381454,581,076 - 54,581,381 (+)NCBIGRCm38GRCm38mm10GRCm38
Cytogenetic Map14C2NCBI
RNU6-832P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38769,125,270 - 69,125,374 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl769,125,270 - 69,125,376 (+)EnsemblGRCh38hg38GRCh38
GRCh37768,590,257 - 68,590,361 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q11.22NCBI
CHM1_1768,685,976 - 68,686,080 (+)NCBICHM1_1
T2T-CHM13v2.0770,347,953 - 70,348,057 (+)NCBIT2T-CHM13v2.0
LOC119864328
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha186,592,357 - 6,592,463 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0186,794,287 - 6,794,393 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl186,794,287 - 6,794,393 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1186,777,752 - 6,777,858 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0186,746,861 - 6,746,967 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0186,859,776 - 6,859,882 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Rnu6-ps1
4 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse


Expression


Sequence



Additional Information

Database Acc Id Source(s)
MGD MGI:97990 ENTREZGENE
NCBI Gene 19863 ENTREZGENE
PhenoGen Rnu6-ps1 PhenoGen