Gm5069 (predicted pseudogene 5069) - Rat Genome Database

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Gene: Gm5069 (predicted pseudogene 5069) Mus musculus
Analyze
No known orthologs.
Symbol: Gm5069
Name: predicted pseudogene 5069
RGD ID: 1620484
MGI Page MGI
Description:
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: PROVISIONAL
Previously known as: EG277333; MGC68323
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Gapdh  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,154,534 - 180,158,114 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,154,739 - 180,155,749 (-)EnsemblGRCm39 Ensembl
GRCm381180,326,969 - 180,330,549 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,326,970 - 180,330,550 (-)EnsemblGRCm38mm10GRCm38
MGSCv371182,257,100 - 182,260,680 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,163,645 - 182,167,225 (-)NCBIMGSCv36mm8
Celera1187,390,445 - 187,394,033 (-)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:21267068   PMID:21677750  


Genomics

Variants

.
Variants in Gm5069
116 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:176
Count of miRNA genes:149
Interacting mature miRNAs:158
Transcripts:ENSMUST00000050581
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172532197195154279Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
1300960Hpic2_mhaloperidol induced catalepsy 2 (mouse)Not determined1175468817181400659Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171632048192681050Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175211318195154279Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167756737189303617Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167586086191225397Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
10045887Cplaq13_mcircadian period of locomotor activity 13 (mouse)Not determined1172831765181400659Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1162977097185994196Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
11532690Sluc37_msusceptibility to lung cancer 37 (mouse)1175468817194111528Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse

Markers in Region
Gapdh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
cM Map656.0UniSTS
cM Map656.0UniSTS
UniSTS:234290  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,330,499 - 180,330,732UniSTSGRCm38
MGSCv371182,260,630 - 182,260,863UniSTSGRCm37
Celera1187,393,983 - 187,394,216UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map1H5UniSTS
cM Map1100.0UniSTS
PMC112637P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map9A5.3UniSTS
cM Map656.0UniSTS
PMC114224P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H4UniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
cM Map656.0UniSTS
PMC133555P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H4UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
cM Map656.0UniSTS
PMC150876P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H4UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
cM Map656.0UniSTS
PMC152933P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H4UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
cM Map656.0UniSTS
RH140655  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,330,528 - 180,330,720UniSTSGRCm38
MGSCv371182,260,659 - 182,260,851UniSTSGRCm37
Celera1187,394,012 - 187,394,204UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1H4UniSTS
cM Map1100.0UniSTS
G65758  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H4UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
cM Map656.0UniSTS
Gapd  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5A1UniSTS
cM Map656.0UniSTS
PMC303337P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H4UniSTS
Cytogenetic Map11A3.3UniSTS
Cytogenetic Map6F2UniSTS
cM Map656.0UniSTS
PMC98059P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H4UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
cM Map656.0UniSTS
Gapdh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.3UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map9F2UniSTS
Gapdh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map9F2UniSTS
Gapdh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14C1UniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
Cytogenetic Map1H4UniSTS
cM Map656.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000050581
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,154,535 - 180,158,115 (-)Ensembl
GRCm38.p6 Ensembl1180,326,970 - 180,330,550 (-)Ensembl
RefSeq Acc Id: ENSMUST00000192714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,154,739 - 180,155,749 (-)Ensembl
GRCm38.p6 Ensembl1180,327,174 - 180,328,184 (-)Ensembl
RefSeq Acc Id: NR_003623
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,154,534 - 180,158,114 (-)NCBI
GRCm381180,326,969 - 180,330,549 (-)ENTREZGENE
MGSCv371182,257,100 - 182,260,680 (-)RGD
Celera1187,390,445 - 187,394,033 (-)RGD
cM Map1 ENTREZGENE
Sequence:
Promoters
RGD ID:6875914
Promoter ID:EPDNEW_M1408
Type:single initiation site
Name:Gm5069_1
Description:Mus musculus predicted pseudogene 5069 , non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381180,328,255 - 180,328,315EPDNEW
RGD ID:6817208
Promoter ID:MM_KWN:3120
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   MEF_B6
Transcripts:ENSMUST00000050581,   NR_003623
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361182,260,601 - 182,261,482 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000055676 Ensembl
MGD MGI:3644516 ENTREZGENE
NCBI Gene 277333 ENTREZGENE
PhenoGen Gm5069 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm5069  predicted pseudogene 5069  Gm5069  predicted gene 5069  Symbol and/or name change 5135510 APPROVED