Gm5116 (predicted gene 5116) - Rat Genome Database

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Gene: Gm5116 (predicted gene 5116) Mus musculus
Analyze
Symbol: Gm5116
Name: predicted gene 5116
RGD ID: 1620447
MGI Page MGI
Description:
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L23a pseudogene; 60S ribosomal protein L23a-like; EG330689
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39732,195,063 - 32,195,530 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl732,195,063 - 32,195,525 (+)EnsemblGRCm39 Ensembl
GRCm38732,495,638 - 32,496,105 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl732,495,638 - 32,496,100 (+)EnsemblGRCm38mm10GRCm38
MGSCv37733,280,657 - 33,281,124 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv37733,280,657 - 33,281,124 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36732,204,398 - 32,204,865 (+)NCBIMGSCv36mm8
Celera726,404,288 - 26,404,755 (+)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm5116
1 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
1301041Prnr2_mprion resistance 2 (mouse)Not determined71872879439674033Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
7394747asp3_maudiogenic seizure prone 3 (mouse)Not determined72730579836842367Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_036153631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000187732
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl732,195,063 - 32,195,525 (+)Ensembl
GRCm38.p6 Ensembl732,495,638 - 32,496,100 (+)Ensembl
RefSeq Acc Id: XM_036153631   ⟹   XP_036009524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39732,195,063 - 32,195,530 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_036009524 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_036009524   ⟸   XM_036153631


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3649164 AgrOrtholog
Ensembl Genes ENSMUSG00000100751 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000187732 ENTREZGENE
MGD MGI:3649164 ENTREZGENE
NCBI Gene Gm5116 ENTREZGENE
PhenoGen Gm5116 PhenoGen