Gm26504 (predicted gene, 26504) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gm26504 (predicted gene, 26504) Mus musculus
Analyze
Symbol: Gm26504
Name: predicted gene, 26504
RGD ID: 1620048
MGI Page MGI
Description: ASSOCIATED WITH Angelman syndrome (ortholog); autistic disorder (ortholog); chromosome 15q11.2 deletion syndrome (ortholog); INTERACTS WITH 3-methylcholanthrene; carbon nanotube; propofol
Type: snorna
RefSeq Status: VALIDATED
Previously known as: MBII-85; Pwcr1; small nucleolar RNA, C/D box 116; Snord116
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Annotation category: suggests misassembly
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39759,325,738 - 59,325,827 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl759,325,736 - 59,325,829 (-)EnsemblGRCm39 Ensembl
GRCm38759,675,990 - 59,676,079 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl759,675,988 - 59,676,081 (-)EnsemblGRCm38mm10GRCm38
MGSCv37766,931,360 - 66,931,449 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36759,543,859 - 59,543,948 (-)NCBIMGSCv36mm8
Cytogenetic Map7B5NCBI
cM Map729.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11007541   PMID:11106375   PMID:11387227   PMID:11668390   PMID:12045206   PMID:12971993   PMID:15634360   PMID:16075369   PMID:16987518   PMID:18166085   PMID:18320030  


Genomics

Comparative Map Data
Gm26504
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39759,325,738 - 59,325,827 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl759,325,736 - 59,325,829 (-)EnsemblGRCm39 Ensembl
GRCm38759,675,990 - 59,676,079 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl759,675,988 - 59,676,081 (-)EnsemblGRCm38mm10GRCm38
MGSCv37766,931,360 - 66,931,449 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36759,543,859 - 59,543,948 (-)NCBIMGSCv36mm8
Cytogenetic Map7B5NCBI
cM Map729.0NCBI
SNORD116-9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381525,073,106 - 25,073,202 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1525,073,107 - 25,073,201 (+)EnsemblGRCh38hg38GRCh38
GRCh371525,318,253 - 25,318,349 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361522,869,346 - 22,869,442 (+)NCBINCBI36Build 36hg18NCBI36
Celera153,480,224 - 3,480,320 (+)NCBICelera
Cytogenetic Map15q11.2NCBI
HuRef153,454,111 - 3,454,207 (+)NCBIHuRef
CHM1_11525,267,773 - 25,267,869 (+)NCBICHM1_1
T2T-CHM13v2.01522,809,765 - 22,809,861 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in Gm26504
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:217
Count of miRNA genes:204
Interacting mature miRNAs:217
Transcripts:ENSMUST00000102033
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74524974879249748Mouse
25314302Vmm2_mvariable multisystem mineralization 2, heart (mouse)74714974874149748Mouse
12738423Lfibq6_mliver fibrosis QTL 6 (mouse)74769437866704862Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74838446182384607Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
13432171Rosd1_mrotarod saline difference 1 (mouse)75919437869004862Mouse

Markers in Region
Pwcr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
cM Map729.0UniSTS
33.MMHAP27FRC12.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
cM Map729.0UniSTS
Whitehead_YAC7 UniSTS
Snord116  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
cM Map729.0UniSTS
Pwcr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
cM Map729.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000102033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl759,325,736 - 59,325,829 (-)Ensembl
GRCm38.p6 Ensembl759,675,988 - 59,676,081 (-)Ensembl
RefSeq Acc Id: NR_002895
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39759,325,738 - 59,325,827 (-)NCBI
GRCm38759,675,990 - 59,676,079 (-)ENTREZGENE
MGSCv37766,931,360 - 66,931,449 (-)RGD
cM Map7 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000096019 Ensembl
  ENSMUSG00000118899 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000102033 ENTREZGENE
MGD MGI:5456281 ENTREZGENE
NCBI Gene 64243 ENTREZGENE
PhenoGen Gm26504 PhenoGen
RNAcentral URS0000759958 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-11-06 Gm26504  predicted gene, 26504  Snord116  small nucleolar RNA, C/D box 116  Symbol and/or name change 5135510 APPROVED
2011-07-27 Snord116  small nucleolar RNA, C/D box 116  Snord116  small nucleolar RNA, C/D box 116 cluster  Symbol and/or name change 5135510 APPROVED