Gm5958 (predicted pseudogene 5958) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gm5958 (predicted pseudogene 5958) Mus musculus
Analyze
Symbol: Gm5958
Name: predicted pseudogene 5958
RGD ID: 1618677
MGI Page MGI
Description:
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: EG546623
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914100,072,916 - 100,073,695 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14100,072,954 - 100,073,250 (-)EnsemblGRCm39 Ensembl
GRCm381499,835,485 - 99,836,226 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1499,835,518 - 99,835,814 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714100,234,737 - 100,235,033 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361498,718,652 - 98,718,948 (-)NCBIMGSCv36mm8
Celera1498,508,568 - 98,508,864 (-)NCBICelera
Cytogenetic Map14E2.2NCBI
cM Map1450.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm5958
34 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:127
Count of miRNA genes:124
Interacting mature miRNAs:124
Transcripts:ENSMUST00000147698
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse
14928314Manh77_mmandible shape 77 (mouse)1476767790110767790Mouse
1558823Tbbmd6_mtotal body bone mineral density 6 (mouse)Not determined1477073696111073787Mouse
4142508Tgq25_mtriglyceride QTL 25 (mouse)Not determined85134068119134068Mouse
13524530Bodwtq11_mbody wweight QTL 11 (mouse)1487767629102538219Mouse
12792981Fbmd5_mfemoral bone mineral density 5, females only (mouse)1499838217125033054Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_036158992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000147698
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14100,072,954 - 100,073,250 (-)Ensembl
GRCm38.p6 Ensembl1499,835,518 - 99,835,814 (-)Ensembl
RefSeq Acc Id: XM_036158992   ⟹   XP_036014885
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914100,072,916 - 100,073,695 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_036014885 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_036014885   ⟸   XM_036158992


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000087144 Ensembl
MGD MGI:3647972 ENTREZGENE
NCBI Gene 546623 ENTREZGENE
PhenoGen Gm5958 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm5958  predicted pseudogene 5958  Gm5958  predicted gene 5958  Symbol and/or name change 5135510 APPROVED