Gm5766 (predicted gene 5766) - Rat Genome Database

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Gene: Gm5766 (predicted gene 5766) Mus musculus
Analyze
Symbol: Gm5766
Name: predicted gene 5766 (Ensembl:ribosomal protein L7a pseudogene)
RGD ID: 1617151
MGI Page MGI
Description:
Type: pseudo (Ensembl: lncRNA)
RefSeq Status: PROVISIONAL
Previously known as: EG436332
Related Functional Gene: Rpl7a  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,047,093 - 4,049,069 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl164,047,094 - 4,049,070 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl164,048,165 - 4,048,963 (+)EnsemblGRCm39 Ensembl
GRCm38164,229,229 - 4,231,205 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,229,230 - 4,231,206 (+)EnsemblGRCm38mm10GRCm38
MGSCv37164,229,229 - 4,231,205 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36164,144,458 - 4,146,434 (+)NCBIMGSCv36mm8
Celera164,861,770 - 4,863,746 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map162.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm5766
58 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:220
Count of miRNA genes:190
Interacting mature miRNAs:196
Transcripts:ENSMUST00000160520, ENSMUST00000161633
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141060Pbwg19_mpostnatal body weight growth 19 (mouse)Not determined16120780888Mouse
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122500574Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122520318Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16122897739Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124263853Mouse
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124263853Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128434358Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129674200Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130066977Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
1302106Rapop1_mradiation-induced apoptosis 1 (mouse)Not determined16378077915731053Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse

Markers in Region
Rpl7a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4C4UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
cM Map218.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000160520
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl164,047,094 - 4,049,070 (+)Ensembl
GRCm38.p6 Ensembl164,229,230 - 4,231,206 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161633
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl164,048,165 - 4,048,963 (+)Ensembl
GRCm38.p6 Ensembl164,230,301 - 4,231,099 (+)Ensembl
RefSeq Acc Id: NR_003628
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39164,047,093 - 4,049,069 (+)NCBI
GRCm38164,229,229 - 4,231,205 (+)ENTREZGENE
MGSCv37164,229,229 - 4,231,205 (+)RGD
Celera164,861,770 - 4,863,746 (+)RGD
cM Map16 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAC26833 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
Protein Domains
Ribosomal protein eL8/eL30/eS12/Gadd45


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000089645 Ensembl
  ENSMUSG00000121720 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000160520 ENTREZGENE
Gene3D-CATH 3.30.1330.30 UniProtKB/TrEMBL
InterPro L30e-like UniProtKB/TrEMBL
  Ribosomal_L7A/L8 UniProtKB/TrEMBL
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/TrEMBL
  Ribosomal_L7Ae/L8/Nhp2 UniProtKB/TrEMBL
  Ribosomal_L7Ae_CS UniProtKB/TrEMBL
MGD MGI:3643508 ENTREZGENE
NCBI Gene 436332 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L7A UniProtKB/TrEMBL
  RIBOSOMAL PROTEIN L7AE FAMILY MEMBER UniProtKB/TrEMBL
Pfam Ribosomal_L7Ae UniProtKB/TrEMBL
PhenoGen Gm5766 PhenoGen
PRINTS L7ARS6FAMILY UniProtKB/TrEMBL
  RIBOSOMALL7A UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L7AE UniProtKB/TrEMBL
Superfamily-SCOP SSF55315 UniProtKB/TrEMBL
UniProt Q8CDE3_MOUSE UniProtKB/TrEMBL