BC021767 (cDNA sequence BC021767) - Rat Genome Database

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Gene: BC021767 (cDNA sequence BC021767) Mus musculus
Analyze
No known orthologs.
Symbol: BC021767
Name: cDNA sequence BC021767
RGD ID: 1617129
MGI Page MGI
Description:
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Cgn  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39394,567,896 - 94,574,459 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl394,569,215 - 94,578,003 (-)EnsemblGRCm39 Ensembl
GRCm38394,660,589 - 94,667,152 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl394,661,830 - 94,670,696 (-)EnsemblGRCm38mm10GRCm38
MGSCv37394,464,511 - 94,471,074 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36394,745,988 - 94,759,148 (-)NCBIMGSCv36mm8
Celera396,098,194 - 96,104,625 (-)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12477932  


Genomics

Variants

.
Variants in BC021767
175 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:188
Count of miRNA genes:158
Interacting mature miRNAs:164
Transcripts:ENSMUST00000126387, ENSMUST00000136988
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse

Markers in Region
AI647528  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38394,760,946 - 94,761,080UniSTSGRCm38
GRCm38394,661,460 - 94,661,594UniSTSGRCm38
MGSCv37394,564,868 - 94,565,002UniSTSGRCm37
MGSCv37394,465,382 - 94,465,516UniSTSGRCm37
Celera396,099,065 - 96,099,199UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map3F2UniSTS
Whitehead/MRC_RH31068.15UniSTS
AI987749  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38394,660,630 - 94,660,751UniSTSGRCm38
GRCm38394,760,116 - 94,760,238UniSTSGRCm38
MGSCv37394,564,038 - 94,564,160UniSTSGRCm37
MGSCv37394,464,552 - 94,464,673UniSTSGRCm37
Celera396,098,235 - 96,098,356UniSTS
Celera393,088,787 - 93,088,909UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map3F2UniSTS
Whitehead/MRC_RH31068.38UniSTS
UniSTS:234749  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38394,760,849 - 94,761,001UniSTSGRCm38
MGSCv37394,564,771 - 94,564,923UniSTSGRCm37
Celera396,098,968 - 96,099,120UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map3F2.1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000126387
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl394,569,215 - 94,578,003 (-)Ensembl
GRCm38.p6 Ensembl394,661,908 - 94,670,696 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136988
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl394,569,137 - 94,573,408 (-)Ensembl
GRCm38.p6 Ensembl394,661,830 - 94,666,101 (-)Ensembl
RefSeq Acc Id: NR_033629
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39394,567,896 - 94,574,459 (-)NCBI
GRCm38394,660,589 - 94,667,152 (-)ENTREZGENE
MGSCv37394,464,511 - 94,471,074 (-)RGD
Celera396,098,194 - 96,104,625 (-)RGD
cM Map3 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000085006 Ensembl
MGD MGI:3615512 ENTREZGENE
NCBI Gene 545551 ENTREZGENE
PhenoGen BC021767 PhenoGen