Rps6-ps2 (ribosomal protein S6, pseudogene 2) - Rat Genome Database

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Gene: Rps6-ps2 (ribosomal protein S6, pseudogene 2) Mus musculus
Analyze
Symbol: Rps6-ps2
Name: ribosomal protein S6, pseudogene 2
RGD ID: 1616284
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG214738; EG626259; Gm16406; predicted gene, EG214738
Related Functional Gene: Rps6  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39889,532,988 - 89,533,802 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl889,533,019 - 89,533,765 (+)EnsemblGRCm39 Ensembl
GRCm38888,806,360 - 88,807,174 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl888,806,391 - 88,807,137 (+)EnsemblGRCm38mm10GRCm38
MGSCv37891,330,259 - 91,331,073 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36891,330,251 - 91,331,081 (+)NCBIMGSCv36mm8
Celera893,084,882 - 93,085,696 (+)NCBICelera
Cytogenetic Map8C3NCBI
cM Map843.51NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Rps6-ps2
48 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:129
Interacting mature miRNAs:130
Transcripts:ENSMUST00000079841
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85629887290298872Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85913640493136404Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86151347995513605Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7158942790929226Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88079340489740987Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined886443553120443701Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined886443553120443701Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined886443553120443701Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000079841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl889,533,019 - 89,533,765 (+)Ensembl
GRCm38.p6 Ensembl888,806,391 - 88,807,137 (+)Ensembl
Protein Sequences
GenBank Protein EDL11061 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000056772 Ensembl, ENTREZGENE
MGD MGI:3646827 ENTREZGENE
NCBI Gene 675985 ENTREZGENE
PhenoGen Rps6-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-31 Rps6-ps2  ribosomal protein S6, pseudogene 2  EG214738  predicted gene, EG214738  Data merged from RGD:1622115 737654 PROVISIONAL
2011-07-27 Rps6-ps2  ribosomal protein S6, pseudogene 2  Gm16406  predicted gene 16406  Symbol and/or name change 5135510 APPROVED