Klk1b7-ps (kallikrein 1-related peptidase b7, pseudogene) - Rat Genome Database

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Gene: Klk1b7-ps (kallikrein 1-related peptidase b7, pseudogene) Mus musculus
Analyze
Symbol: Klk1b7-ps
Name: kallikrein 1-related peptidase b7, pseudogene
RGD ID: 1615993
MGI Page MGI
Description: INTERACTS WITH 4,4'-diaminodiphenylmethane
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: 1700127D06Rik; Klk-; Klk-ps2; mGK-7; RIKEN cDNA 1700127D06 gene
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39743,594,495 - 43,595,355 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl743,592,086 - 43,595,280 (+)EnsemblGRCm39 Ensembl
GRCm38743,945,012 - 43,945,927 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl743,942,662 - 43,945,927 (+)EnsemblGRCm38mm10GRCm38
MGSCv37751,200,382 - 51,201,297 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36751,198,032 - 51,201,255 (+)NCBIMGSCv36mm8
Celera739,403,616 - 39,404,536 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:3007510   PMID:3036794   PMID:6602295   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12040188   PMID:12437987   PMID:12466851   PMID:15203212   PMID:16141072  
PMID:16141073  


Genomics

Variants

.
Variants in Klk1b7-ps
34 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:125
Count of miRNA genes:95
Interacting mature miRNAs:100
Transcripts:ENSMUST00000078897, ENSMUST00000183762
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3349772758148965Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3349772758148965Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3349772758148965Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73349772758148965Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73349772758148965Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse

Markers in Region
Ngfa  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7B4UniSTS
cM Map723.02UniSTS
cM Map723.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000078897
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl743,594,436 - 43,595,351 (+)Ensembl
GRCm38.p6 Ensembl743,945,012 - 43,945,927 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183762
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl743,592,086 - 43,595,280 (+)Ensembl
GRCm38.p6 Ensembl743,942,662 - 43,945,856 (+)Ensembl
RefSeq Acc Id: NR_033120
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39743,594,495 - 43,595,355 (+)NCBI
GRCm38743,945,012 - 43,945,927 (+)ENTREZGENE
MGSCv37751,200,382 - 51,201,297 (+)RGD
Celera739,403,616 - 39,404,536 (+)RGD
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAB24941 (Get FASTA)   NCBI Sequence Viewer  
  EDL22689 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:8663815
Promoter ID:EPDNEW_M9938
Type:initiation region
Name:Klk1b7-ps_1
Description:Mus musculus kallikrein 1-related peptidase b7, pseudogene (Klk1b7-ps),non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38743,945,015 - 43,945,075EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000060161 Ensembl
  ENSMUSG00000121303 ENTREZGENE
Ensembl Transcript ENSMUST00000078897 ENTREZGENE
MGD MGI:892027 ENTREZGENE
NCBI Gene 16604 ENTREZGENE
PhenoGen Klk1b7-ps PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-09 Klk1b7-ps  kallikrein 1-related peptidase b7, pseudogene  1700127D06Rik  RIKEN cDNA 1700127D06 gene  Data merged from RGD:1622212 737654 PROVISIONAL