Gm5436 (predicted pseudogene 5436) - Rat Genome Database

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Gene: Gm5436 (predicted pseudogene 5436) Mus musculus
Analyze
Symbol: Gm5436
Name: predicted pseudogene 5436
RGD ID: 1615473
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG432676
Related Functional Gene: Atp5po  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391284,305,051 - 84,305,763 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1284,305,105 - 84,305,747 (-)EnsemblGRCm39 Ensembl
GRCm381284,258,277 - 84,258,989 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1284,258,331 - 84,258,973 (-)EnsemblGRCm38mm10GRCm38
MGSCv371285,599,227 - 85,599,939 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361285,147,995 - 85,155,959 (-)NCBIMGSCv36mm8
Celera1285,705,182 - 85,705,894 (-)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1239.12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:18614015  


Genomics

Variants

.
Variants in Gm5436
22 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:97
Interacting mature miRNAs:99
Transcripts:ENSMUST00000058103
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse

Markers in Region
RH136609  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381284,258,717 - 84,258,905UniSTSGRCm38
MGSCv371285,599,667 - 85,599,855UniSTSGRCm37
Celera1285,705,622 - 85,705,810UniSTS
Celera356,371,548 - 56,371,736UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map16C4UniSTS
Atp5o  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381284,258,599 - 84,258,854UniSTSGRCm38
MGSCv371285,599,549 - 85,599,804UniSTSGRCm37
Celera1285,705,504 - 85,705,759UniSTS
Celera356,371,599 - 56,371,854UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map16C4UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000058103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1284,305,105 - 84,305,747 (-)Ensembl
GRCm38.p6 Ensembl1284,258,331 - 84,258,973 (-)Ensembl
Protein Sequences
GenBank Protein EDL02769 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000042962 Ensembl, ENTREZGENE
MGD MGI:3643291 ENTREZGENE
NCBI Gene 432676 ENTREZGENE
PhenoGen Gm5436 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm5436  predicted pseudogene 5436  Gm5436  predicted gene 5436  Symbol and/or name change 5135510 APPROVED