Rps2-ps6 (ribosomal protein S2, pseudogene 6) - Rat Genome Database

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Gene: Rps2-ps6 (ribosomal protein S2, pseudogene 6) Mus musculus
Analyze
Symbol: Rps2-ps6
Name: ribosomal protein S2, pseudogene 6
RGD ID: 1615373
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG628962; Gm16408
Related Functional Gene: Rps2  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391476,474,087 - 76,475,014 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1476,474,131 - 76,474,985 (-)EnsemblGRCm39 Ensembl
GRCm381476,236,647 - 76,237,574 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1476,236,691 - 76,237,545 (-)EnsemblGRCm38mm10GRCm38
MGSCv371476,636,454 - 76,637,381 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361476,636,409 - 76,637,382 (-)NCBIMGSCv36mm8
Celera1473,736,657 - 73,737,584 (-)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1440.39NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:3405219   PMID:15782199   PMID:20003482   PMID:21873635  


Genomics

Variants

.
Variants in Rps2-ps6
14 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:51
Interacting mature miRNAs:51
Transcripts:ENSMUST00000095471
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000095471
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1476,474,131 - 76,474,985 (-)Ensembl
GRCm38.p6 Ensembl1476,236,691 - 76,237,545 (-)Ensembl
Protein Sequences
GenBank Protein EDL35809 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000095427 Ensembl, ENTREZGENE
MGD MGI:3644876 ENTREZGENE
NCBI Gene 100043752 ENTREZGENE
PhenoGen Rps2-ps6 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Rps2-ps6  ribosomal protein S2, pseudogene 6  Gm16408  predicted gene 16408  Symbol and/or name change 5135510 APPROVED