Gm27174 (predicted gene 27174) - Rat Genome Database

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Gene: Gm27174 (predicted gene 27174) Mus musculus
Analyze
Symbol: Gm27174
Name: predicted gene 27174
RGD ID: 1614143
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: D930020E02Rik; envelope glycoprotein syncytin-B; LOC115488278; placenta-specific/fusogenic; Synb; syncytin b; syncytin-B; uncharacterized LOC115488278
RGD Orthologs
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391469,760,100 - 69,792,776 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1469,783,698 - 69,792,812 (-)EnsemblGRCm39 Ensembl
GRCm381469,508,628 - 69,555,417 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1469,508,632 - 69,512,549 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1469,546,249 - 69,555,332 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1469,289,344 - 69,294,299 (-)EnsemblGRCm38mm10GRCm38
MGSCv371469,908,455 - 69,912,356 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361468,243,728 - 68,247,629 (-)NCBIMGSCv36mm8
Celera1467,069,330 - 67,073,231 (-)NCBICelera
Cytogenetic Map14D2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Gm27174
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391469,760,100 - 69,792,776 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1469,783,698 - 69,792,812 (-)EnsemblGRCm39 Ensembl
GRCm381469,508,628 - 69,555,417 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1469,508,632 - 69,512,549 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1469,546,249 - 69,555,332 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1469,289,344 - 69,294,299 (-)EnsemblGRCm38mm10GRCm38
MGSCv371469,908,455 - 69,912,356 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361468,243,728 - 68,247,629 (-)NCBIMGSCv36mm8
Celera1467,069,330 - 67,073,231 (-)NCBICelera
Cytogenetic Map14D2NCBI
Synb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81550,989,313 - 50,996,237 (-)NCBIGRCr8
mRatBN7.21544,580,818 - 44,588,417 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1544,583,476 - 44,585,345 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1548,701,396 - 48,703,265 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01549,812,888 - 49,814,757 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01546,672,221 - 46,674,090 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01551,174,986 - 51,222,929 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1551,174,989 - 51,176,858 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01554,904,788 - 54,952,331 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41549,853,767 - 49,855,636 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1544,266,431 - 44,268,300 (-)NCBICelera
Cytogenetic Map15p11NCBI

Variants

.
Variants in Gm27174
582 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:819
Count of miRNA genes:416
Interacting mature miRNAs:503
Transcripts:ENSMUST00000059362, ENSMUST00000184652
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse

Markers in Region
D14Mit216  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381469,294,509 - 69,294,684UniSTSGRCm38
GRCm381469,512,759 - 69,512,934UniSTSGRCm38
MGSCv371469,912,566 - 69,912,741UniSTSGRCm37
Celera1467,073,441 - 67,073,616UniSTS
Cytogenetic Map14D2UniSTS
cM Map1432.5UniSTS
Whitehead Genetic1440.4UniSTS
Whitehead_YAC14 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_171048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC214054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000059362   ⟹   ENSMUSP00000061107
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1469,526,793 - 69,531,748 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184493
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1469,783,698 - 69,792,781 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184652   ⟹   ENSMUSP00000139267
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1469,508,632 - 69,512,549 (-)Ensembl
RefSeq Acc Id: ENSMUST00000246050
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1469,785,256 - 69,792,781 (-)Ensembl
RefSeq Acc Id: ENSMUST00000246053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1469,785,406 - 69,792,812 (-)Ensembl
RefSeq Acc Id: ENSMUST00000246076
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1469,785,408 - 69,792,771 (-)Ensembl
RefSeq Acc Id: NR_171048
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391469,760,100 - 69,792,776 (-)NCBI

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3045308 AgrOrtholog
Ensembl Genes ENSMUSG00000047977 Ensembl
  ENSMUSG00000098773 Ensembl
  ENSMUSG00000098784 Ensembl
MGD MGI:5521017 ENTREZGENE
NCBI Gene LOC115488278 ENTREZGENE
PhenoGen Gm27174 PhenoGen
RNAcentral URS00021231DC RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-10-27 Gm27174  predicted gene 27174  LOC115488278  uncharacterized LOC115488278  Symbol and/or name change 5135510 APPROVED
2020-09-29 LOC115488278  uncharacterized LOC115488278  LOC115488278  syncytin-B  Symbol and/or name change 5135510 APPROVED
2020-06-19 LOC115488278  syncytin-B  Synb  syncytin b  Symbol and/or name change 5135510 APPROVED
2011-10-18 Synb  syncytin b  D930020E02Rik  RIKEN cDNA D930020E02 gene  Symbol and/or name change 5135510 APPROVED