Gm2491 (predicted gene 2491) - Rat Genome Database

Name: Gm2491
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm2491 (predicted gene 2491) Mus musculus

Analyze

Symbol:

Gm2491 (Ensembl: 4930478E11Rik)

Name:

predicted gene 2491 (Ensembl:RIKEN cDNA 4930478E11 gene)

RGD ID:

1609718

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

4930478E11R; 4930478E11Rik; hypothetical protein LOC74938; RIKEN cDNA 4930478E11 gene; uncharacterized protein LOC74938

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	54,844,729 - 54,850,259 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	54,844,729 - 54,850,287 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	54,981,333 - 54,986,863 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	54,981,333 - 54,986,891 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	54,812,888 - 54,818,421 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	15	56,521,181 - 56,525,982 (-)	NCBI		Celera
Cytogenetic Map	15	D1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073

Genomics

Variants

Variants in Gm2491
205 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301433	Rapop5_m	radiation-induced apoptosis 5 (mouse)			Not determined		15	9273022	79474762	Mouse
1301345	Bgeq14_m	body growth early QTL 14 (mouse)			Not determined		15	26311780	60311880	Mouse
1300578	Cd8ts3_m	CD8 T cell subset 3 (mouse)			Not determined		15	34004694	68004804	Mouse
1301568	Tria2_m	T-cell receptor induced activation 2 (mouse)			Not determined		15	44859141	78859281	Mouse
26884417	Bzwq4_m	bi-zygomatic width QTL 4, 5 week (mouse)					15	6129481	72471849	Mouse
27226721	Tibw8_m	tibia width 8, proximal, 16 week (mouse)					15	6929481	75871849	Mouse
27226729	Tibmd2_m	tibia midshaft diameter 2, 5 week (mouse)					15	38000244	86684201	Mouse
26884402	Cvht9_m	cranial vault height 9, 16 week (mouse)					15	42163396	95497881	Mouse
26884442	Sklq6_m	skull length QTL 6, 5 week (mouse)					15	6129481	100797881	Mouse
12859289	Criq3_m	Citrobacter rodentium infection QTL 3 (mouse)					15	22593765	56593765	Mouse
10755515	Amzn3_m	anatomical modifier of Zfp423 3 (mouse)					15	46389646	80389845	Mouse
4142252	Tailaq4_m	tail length adjusted QTL 4 (mouse)			Not determined			3489694	78601286	Mouse
1301406	Egrd2_m	early growth rate (mouse)			Not determined		15	26311780	60311880	Mouse
1301860	Gct3_m	granulosa cell tumorigenesis 3 (mouse)			Not determined		15	47409596	81409691	Mouse
1301708	Cocrb14_m	cocaine related behavior 14 (mouse)			Not determined		15	51806515	85806651	Mouse
1301557	Bbaa22_m	B.burgdorferi-associated arthritis 22 (mouse)			Not determined		15	24462572	58462805	Mouse
26884425	Cvht2_m	cranial vault height 2, 5 week (mouse)					15	28800146	102008435	Mouse
1357514	Mbis3_m	Mycobacterium bovis-induced systemic lupus erythematosus 3 (mouse)			Not determined		16	26311780	60311880	Mouse
27226800	Scvln20_m	sacral vertebrae length 2, 16 week (mouse)					15	26600086	66371849	Mouse
10401902	Sicd2_m	seizure-induced cell death 2 (mouse)			Not determined		15	3474389	71197538	Mouse
1357559	Scfq2_m	subcutaneous fat pad weight QTL 2 (mouse)			Not determined		15	3489694	78601286	Mouse
27226759	Feml17_m	femur length 17, 10 week (mouse)					15	7629481	55263396	Mouse
1558985	Eae32_m	experimental allergic encephalomyelitis susceptibility 32 (mouse)			Not determined		15	32578416	103425899	Mouse
1357703	Vtbt17_m	vertebral trabecular bone trait 17 (mouse)			Not determined		15	44553313	78553437	Mouse
10045637	Heal27_m	wound healing/regeneration 29 (mouse)			Not determined		15	51418361	85418511	Mouse
38501067	Tip3_m	tuberculosis immunophenotype 3, IFN-g level (mouse)					15	53563396	89584203	Mouse
26884387	Skwq8_m	skull length QTL 8, 10 week (mouse)					15	6129481	68271849	Mouse
1301450	Bpq6_m	blood pressure QTL 6 (mouse)			Not determined		15	28282646	62282739	Mouse
1357512	Bsbob5_m	BSB obesity 5 (mouse)			Not determined		15	28282646	62282739	Mouse
1357526	Hyplip2_m	hyperlipidemia 2 (mouse)			Not determined		15	12402203	102896555	Mouse
26884420	Cvht6_m	cranial vault height 6, 10 week (mouse)					15	45563396	69171849	Mouse
1357756	Alaa4_m	alopecia areata 4 (mouse)			Not determined		15	46389646	80389845	Mouse
4142448	Tailq6_m	tail length QTL 6 (mouse)			Not determined			3489694	78601286	Mouse
27226717	Tibw4_m	tibia width 4, proximal, 10 week (mouse)					15	6129481	78684200	Mouse
27226734	Tibmd5_m	tibia midshaft diameter 5, 10 week (mouse)					15	6129481	86684201	Mouse
4141192	Ssrq2_m	stress response QTL 2 (mouse)			Not determined			9273022	56186850	Mouse
4142160	Femwf10_m	femur work to failure 10 (mouse)			Not determined			22893014	56893160	Mouse
4141409	Radsvq1_m	radiation sensitivity QTL 1 (mouse)			Not determined			25484978	59484978	Mouse
26884392	Humsd8_m	humerus midshaft diameter 8, 16 week (mouse)					15	29300146	76084200	Mouse
1301580	Hrq2_m	heart rate quantitative locus 2 (mouse)			Not determined		15	39100395	73100593	Mouse
26884399	Humsd1_m	humerus midshaft diameter 1, 5 week (mouse)					15	48363396	101708435	Mouse
1301779	Dpml_m	dopamine loss (mouse)			Not determined		15	51004694	76794493	Mouse
35673313	Ari8_m	antibody response to influenza 8, day 15-45, TotalG (mouse)					15	51463396	54863396	Mouse
10412067	Pain2_m	pain 2 (mouse)			Not determined		15	51645339	85645626	Mouse
27095932	Ulnl11_m	ulna length 11, 16 week (mouse)					15	6129481	76384200	Mouse
27226755	Feml22_m	femur length 22, 16 week (mouse)					15	7629481	59271849	Mouse
4142459	Lfnq3_m	lung function QTL 3 (mouse)			Not determined			40177022	72372580	Mouse
1301429	Pcir3_m	periosteal circumference 3 (mouse)			Not determined		15	48465362	82465496	Mouse
27226786	Feml11_m	femur length 11, 5 week (mouse)					15	6129481	75871849	Mouse
26884452	Sklq17_m	skull length QTL 17, 16 week (mouse)					15	30200146	57963396	Mouse
4142198	Hbtq_m	habituation QTL (mouse)			Not determined		15	51160708	85160833	Mouse
13504731	Cath5_m	carotid atherosclerosis 5 (mouse)					15	54789129	88789129	Mouse
27226777	Tibl8_m	tibia length 8, 5 week (mouse)					15	6929481	84584201	Mouse
1301324	Cdif_m	color difference (mouse)			Not determined		15	35975906	69976019	Mouse
4141952	W3q7_m	weight 3 weeks QTL 7 (mouse)			Not determined			3489694	78601286	Mouse
1357659	Epfpq4_m	epididymal fat percentage QTL 4 (mouse)			Not determined		15	3489694	78601286	Mouse
26884412	Bzwq10_m	bi-zygomatic width QTL 10, 10 week (mouse)					15	6129481	71471849	Mouse
14928313	Manh78_m	mandible shape 78 (mouse)					15	21484641	55484641	Mouse
1300772	Bglq16_m	body growth late QTL 16 (mouse)			Not determined		15	26311780	60311880	Mouse
1300949	Lore5_m	loss of righting induced by ethanol 5 (mouse)			Not determined		15	40019441	58022297	Mouse
26884397	Humsd5_m	humerus midshaft diameter 5, 10 week (mouse)					15	48363396	98397881	Mouse
27226773	Tibl16_m	tibia length 16, 10 week (mouse)					15	6929481	75871849	Mouse
27095940	Ulnl8_m	ulna length 8, 10 week (mouse)					15	7229481	55263396	Mouse
1300967	Bdt6_m	bone density traits 6 (mouse)			Not determined		15	25295806	59295928	Mouse
1301006	Hfib1_m	hepatic fibrogenesis 1 (mouse)			Not determined		15	47306334	81306479	Mouse
1357661	Eae2b_m	susceptibility to experimental allergic encephalomyelitis 2b (mouse)			Not determined		15	51004694	64944308	Mouse
1302080	Szs13_m	seizure susceptibility 13 (mouse)			Not determined		15	51685832	85694449	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_155513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC137950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK015584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC048519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000227127

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	54,844,729 - 54,850,259 (-)	Ensembl
GRCm38.p6 Ensembl	15	54,981,333 - 54,986,863 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000227150

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	54,844,729 - 54,850,287 (-)	Ensembl
GRCm38.p6 Ensembl	15	54,981,333 - 54,986,891 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000227829

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	54,845,570 - 54,850,250 (-)	Ensembl
GRCm38.p6 Ensembl	15	54,982,174 - 54,986,854 (-)	Ensembl

RefSeq Acc Id:

NR_155513

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	15	54,844,729 - 54,850,259 (-)	NCBI
GRCm38	15	54,981,333 - 54,986,863 (-)	NCBI

Sequence:

show sequence

ACATTTTATCTGGTTAACACCATGGTGGACATGCCTGCTGTAAGGTGTCCCCTTAGGAAGTAGG
CATTTGCGACCACAGCGGAGGACACGGACCCTGTAAATGGCATAACCTTACTTTGCCTTGTATC
CCAGCCTTTGCGCTTCATCACACCGGGGATCTGGAGAGCCCTATGCAGCTCAGAGAGCTGGCGG
TAATGCCCGCAGTGGACCTTCAGAAGAAAGCCTATCACACAGGGTTGCTTCTTCTTCCATAGCT
CCTGGATATATTTGTATGTACTCATCTTGGCTCACCTGATGGCTGTCTCCAGAGGAAAGAAGTC
TTTTTTTTCCCCACAGATGAGCATGGGACCACCATTGACGAGTTGCCTGGTCTTAAACATAGCA
ACTTCAGTGGTTCTCCTGGTTAGCCTCCGTTGTTAACATGACACAGCACAGATTTATCTGAAGG
AATCTCAGCTGGGTGATTGCTTTAATCAGATGGACTTGTGGGGCCATTTTCTTCACTGACAATT
GATGAAGGAGGTCCAGGCCCACTGTGGGTGGGGTGGTCCTTGGGCACAGGGACCTGGGCTATAT
AAGAAAGGTAGCTGAAAGGGAACAGGCCACTAAGTAGCATTCCTCCATGGTGCCAGTAGTCTTC
CATCTCCAGGAACTACTTGGCCCAGATACTTGTACACTGAGTGTTCACTGAGCAGGAGGAAAGA
AAACGAGTGGTACACTGAATGCTCTCTTCCGAGAGATACATCCTGGAGGAAGGAAATAATGATG
TCACTGGCCAAGGGCCTCAACACAGCCAGAACACCTCTCCACTGTCCCTTTCCCCCAGACCAAC
TCCTGTCCATCTCTCCTCAGAAAAGAGCAGGCCTCCAAGAGACAACAATGAAACACAGGACAAC
AAGATACAATAAAGCAAGAATTCTGAAAGTGTATATGACTCCTGCAGCCAAGAAGCCTCTGGTC
TCTCAGCAGTCAAAACTAGGCACAAGGTAAATGTATGTCTAATTTTCAAGATCTGGGAACATTA
GTTTACATCATGGATCTGACAACTGCAACCAAAGTACTGTTTGCGATTAAAGTGAAAGAAACAT
C

hide sequence

Promoters

RGD ID:

15094555

Promoter ID:

EPDNEWNC_M2470

Type:

single initiation site

Name:

4930478E11Rik_1

Description:

RIKEN cDNA 4930478E11 gene [Source:MGISymbol;Acc:MGI:1922188]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	15	54,986,863 - 54,986,923	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000115245	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000227127	ENTREZGENE
MGD	MGI:3780658	ENTREZGENE
NCBI Gene	100039911	ENTREZGENE
PhenoGen	Gm2491	PhenoGen
RNAcentral	URS00009BFAFC	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-19	Gm2491	predicted gene 2491	4930478E11Rik	RIKEN cDNA 4930478E11 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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