ZMAT5 (zinc finger matrin-type 5) - Rat Genome Database

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Gene: ZMAT5 (zinc finger matrin-type 5) Homo sapiens
Analyze
Symbol: ZMAT5
Name: zinc finger matrin-type 5
RGD ID: 1607019
HGNC Page HGNC:28046
Description: Predicted to enable zinc ion binding activity. Predicted to be involved in RNA splicing. Located in nucleoplasm. Part of U12-type spliceosomal complex.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: SNRNP20; U11/U12 small nuclear ribonucleoprotein 20 kDa protein; U11/U12 snRNP 20 kDa protein; U11/U12 snRNP 20K; U11/U12-20K; ZC3H19; zinc finger CCCH-type containing 19; zinc finger matrin-type protein 5; zinc finger, matrin type 5; zinc finger, matrin-type 5
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,730,956 - 29,767,007 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2229,730,956 - 29,767,011 (-)EnsemblGRCh38hg38GRCh38
GRCh372230,126,945 - 30,162,996 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362228,456,945 - 28,492,969 (-)NCBINCBI36Build 36hg18NCBI36
Celera2213,926,672 - 13,962,699 (-)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2213,090,579 - 13,126,584 (-)NCBIHuRef
CHM1_12230,086,138 - 30,122,154 (-)NCBICHM1_1
T2T-CHM13v2.02230,194,319 - 30,230,905 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7566098   PMID:9847074   PMID:12477932   PMID:15146077   PMID:15461802   PMID:15489334   PMID:17213182   PMID:18029348   PMID:21873635   PMID:22807096   PMID:24550385   PMID:26186194  
PMID:28514442   PMID:30033366   PMID:32296183   PMID:33961781   PMID:34133714   PMID:34373451   PMID:35559673  


Genomics

Comparative Map Data
ZMAT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,730,956 - 29,767,007 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2229,730,956 - 29,767,011 (-)EnsemblGRCh38hg38GRCh38
GRCh372230,126,945 - 30,162,996 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362228,456,945 - 28,492,969 (-)NCBINCBI36Build 36hg18NCBI36
Celera2213,926,672 - 13,962,699 (-)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2213,090,579 - 13,126,584 (-)NCBIHuRef
CHM1_12230,086,138 - 30,122,154 (-)NCBICHM1_1
T2T-CHM13v2.02230,194,319 - 30,230,905 (-)NCBIT2T-CHM13v2.0
Zmat5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,654,671 - 4,687,669 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,654,678 - 4,687,669 (+)EnsemblGRCm39 Ensembl
GRCm38114,704,656 - 4,737,669 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,704,678 - 4,737,669 (+)EnsemblGRCm38mm10GRCm38
MGSCv37114,604,681 - 4,637,669 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,604,681 - 4,637,669 (+)NCBIMGSCv36mm8
Celera115,203,571 - 5,238,157 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.96NCBI
Zmat5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,791,005 - 83,823,095 (+)NCBIGRCr8
mRatBN7.21479,568,644 - 79,599,595 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1479,568,758 - 79,599,594 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1483,999,301 - 84,030,203 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01485,239,373 - 85,270,273 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01481,689,050 - 81,719,949 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01484,937,843 - 84,968,898 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1484,953,786 - 84,969,116 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01485,614,682 - 85,645,518 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41485,370,610 - 85,386,181 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1478,473,939 - 78,504,972 (+)NCBICelera
Cytogenetic Map14q21NCBI
Zmat5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554553,980,134 - 4,011,664 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554553,981,753 - 4,013,138 (-)NCBIChiLan1.0ChiLan1.0
ZMAT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22339,702,607 - 39,738,750 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12242,403,926 - 42,440,070 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02210,774,446 - 10,810,609 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12228,580,010 - 28,615,512 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2228,580,010 - 28,615,498 (-)Ensemblpanpan1.1panPan2
ZMAT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12622,926,327 - 22,953,189 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2622,926,554 - 22,940,725 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2622,797,335 - 22,824,147 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02623,299,862 - 23,326,695 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12623,010,086 - 23,036,902 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02623,272,639 - 23,299,448 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02623,332,398 - 23,359,218 (-)NCBIUU_Cfam_GSD_1.0
Zmat5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118112,184,881 - 112,215,263 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366573,654,867 - 3,685,750 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366573,655,437 - 3,685,717 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMAT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1446,758,442 - 46,782,969 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11446,758,436 - 46,783,055 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21449,792,639 - 49,817,290 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZMAT5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11912,612,360 - 12,643,906 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1912,610,040 - 12,643,843 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045113,505,269 - 113,535,851 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zmat5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247476,042,843 - 6,080,440 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247476,042,843 - 6,080,512 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZMAT5
7 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 22q11.21-12.3(chr22:18178957-31821193)x3 copy number gain See cases [RCV000050768] Chr22:18178957..31821193 [GRCh38]
Chr22:18661724..32217179 [GRCh37]
Chr22:17041724..30547179 [NCBI36]
Chr22:22q11.21-12.3		 pathogenic
GRCh38/hg38 22q12.1-12.3(chr22:26979579-33992220)x3 copy number gain See cases [RCV000050553] Chr22:26979579..33992220 [GRCh38]
Chr22:27375542..34388209 [GRCh37]
Chr22:25705542..32718209 [NCBI36]
Chr22:22q12.1-12.3		 pathogenic
GRCh38/hg38 22q12.2(chr22:29281920-29878399)x3 copy number gain See cases [RCV000051199] Chr22:29281920..29878399 [GRCh38]
Chr22:29677909..30274388 [GRCh37]
Chr22:28007909..28604388 [NCBI36]
Chr22:22q12.2		 uncertain significance
GRCh38/hg38 22q12.1-12.2(chr22:28278805-31742328)x1 copy number loss See cases [RCV000052870] Chr22:28278805..31742328 [GRCh38]
Chr22:28674793..32138314 [GRCh37]
Chr22:27004793..30468314 [NCBI36]
Chr22:22q12.1-12.2		 pathogenic
GRCh38/hg38 22q12.1-12.2(chr22:28441035-30276511)x1 copy number loss See cases [RCV000052871] Chr22:28441035..30276511 [GRCh38]
Chr22:28837023..30672500 [GRCh37]
Chr22:27167023..29002500 [NCBI36]
Chr22:22q12.1-12.2		 pathogenic
GRCh38/hg38 22q11.1-13.33(chr22:16916608-50739836)x3 copy number gain See cases [RCV000133646] Chr22:16916608..50739836 [GRCh38]
Chr22:17397498..51178264 [GRCh37]
Chr22:15777498..49525130 [NCBI36]
Chr22:22q11.1-13.33		 pathogenic
GRCh38/hg38 22q11.1-13.33(chr22:16916743-50739785)x3 copy number gain See cases [RCV000134730] Chr22:16916743..50739785 [GRCh38]
Chr22:17397633..51178213 [GRCh37]
Chr22:15777633..49525079 [NCBI36]
Chr22:22q11.1-13.33		 pathogenic
GRCh38/hg38 22q11.23-12.3(chr22:23279231-36247369)x3 copy number gain See cases [RCV000138172] Chr22:23279231..36247369 [GRCh38]
Chr22:23621418..36643415 [GRCh37]
Chr22:21951418..34973361 [NCBI36]
Chr22:22q11.23-12.3		 pathogenic
GRCh38/hg38 22q11.21-12.3(chr22:20907226-37187347)x3 copy number gain See cases [RCV000137926] Chr22:20907226..37187347 [GRCh38]
Chr22:21261514..37583387 [GRCh37]
Chr22:19591514..35913333 [NCBI36]
Chr22:22q11.21-12.3		 pathogenic
GRCh38/hg38 22q12.1-12.2(chr22:26451042-31451926)x1 copy number loss See cases [RCV000143415] Chr22:26451042..31451926 [GRCh38]
Chr22:26847008..31847912 [GRCh37]
Chr22:25177008..30177912 [NCBI36]
Chr22:22q12.1-12.2		 pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16054691-51237518)x3 copy number gain See cases [RCV000240091] Chr22:16054691..51237518 [GRCh37]
Chr22:22q11.1-13.33		 pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16054691-51220902)x3 copy number gain See cases [RCV000446956] Chr22:16054691..51220902 [GRCh37]
Chr22:22q11.1-13.33		 pathogenic
GRCh37/hg19 22q12.2(chr22:30021252-30305283)x3 copy number gain See cases [RCV000447326] Chr22:30021252..30305283 [GRCh37]
Chr22:22q12.2		 uncertain significance
GRCh37/hg19 22q12.1-12.2(chr22:29537064-30994320)x3 copy number gain See cases [RCV000448504] Chr22:29537064..30994320 [GRCh37]
Chr22:22q12.1-12.2		 uncertain significance
GRCh37/hg19 22q11.1-13.33(chr22:16054691-51237463)x3 copy number gain See cases [RCV000448847] Chr22:16054691..51237463 [GRCh37]
Chr22:22q11.1-13.33		 pathogenic
GRCh37/hg19 22q12.1-12.3(chr22:28349854-33013062)x3 copy number gain See cases [RCV000510523] Chr22:28349854..33013062 [GRCh37]
Chr22:22q12.1-12.3		 likely pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16888900-51197838) copy number gain See cases [RCV000510873] Chr22:16888900..51197838 [GRCh37]
Chr22:22q11.1-13.33		 pathogenic
GRCh37/hg19 22q11.23-12.3(chr22:23637907-36614412)x3 copy number gain See cases [RCV000511098] Chr22:23637907..36614412 [GRCh37]
Chr22:22q11.23-12.3		 pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16888900-51197838)x3 copy number gain See cases [RCV000512333] Chr22:16888900..51197838 [GRCh37]
Chr22:22q11.1-13.33		 pathogenic
GRCh37/hg19 22q12.2(chr22:29644625-31051719)x1 copy number loss not provided [RCV000684497] Chr22:29644625..31051719 [GRCh37]
Chr22:22q12.2		 pathogenic
GRCh37/hg19 22q11.22-12.3(chr22:22460754-35198232)x3 copy number gain not provided [RCV000684530] Chr22:22460754..35198232 [GRCh37]
Chr22:22q11.22-12.3		 pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16054667-51243435)x3 copy number gain not provided [RCV000741689] Chr22:16054667..51243435 [GRCh37]
Chr22:22q11.1-13.33		 pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16114244-51195728)x3 copy number gain not provided [RCV000741691] Chr22:16114244..51195728 [GRCh37]
Chr22:22q11.1-13.33		 pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16114244-51211392)x3 copy number gain not provided [RCV000741692] Chr22:16114244..51211392 [GRCh37]
Chr22:22q11.1-13.33		 pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16888899-51197838)x3 copy number gain not provided [RCV000846344] Chr22:16888899..51197838 [GRCh37]
Chr22:22q11.1-13.33		 pathogenic
inv(22)(q12.2q12.2) inversion Anaplastic ependymoma [RCV000785873] Chr22:29684716..31740655 [GRCh37]
Chr22:22q12.2		 likely pathogenic
GRCh37/hg19 22q12.1-12.2(chr22:28291202-30450920)x1 copy number loss not provided [RCV001258778] Chr22:28291202..30450920 [GRCh37]
Chr22:22q12.1-12.2		 pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16197005-51224252)x3 copy number gain See cases [RCV001263056] Chr22:16197005..51224252 [GRCh37]
Chr22:22q11.1-13.33		 pathogenic
NC_000022.10:g.(?_29083885)_(30337586_?)del deletion Neurofibromatosis, type 2 [RCV001390044] Chr22:29083885..30337586 [GRCh37]
Chr22:22q12.1-12.2		 pathogenic
NC_000022.10:g.(?_29105984)_(30337586_?)del deletion Familial cancer of breast [RCV001390747] Chr22:29105984..30337586 [GRCh37]
Chr22:22q12.1-12.2		 pathogenic
GRCh37/hg19 22q12.2(chr22:30021252-30305283) copy number gain not specified [RCV002052749] Chr22:30021252..30305283 [GRCh37]
Chr22:22q12.2		 uncertain significance
NC_000022.10:g.(?_29083885)_(34046674_?)dup duplication not provided [RCV001979643] Chr22:29083885..34046674 [GRCh37]
Chr22:22q12.1-12.3		 uncertain significance
NM_001003692.2(ZMAT5):c.139A>G (p.Ile47Val) single nucleotide variant Inborn genetic diseases [RCV002905183] Chr22:29742469 [GRCh38]
Chr22:30138458 [GRCh37]
Chr22:22q12.2		 uncertain significance
NM_001003692.2(ZMAT5):c.460C>T (p.Arg154Trp) single nucleotide variant Inborn genetic diseases [RCV002698696] Chr22:29731278 [GRCh38]
Chr22:30127267 [GRCh37]
Chr22:22q12.2		 uncertain significance
NM_001003692.2(ZMAT5):c.424G>T (p.Gly142Cys) single nucleotide variant Inborn genetic diseases [RCV002935528] Chr22:29731314 [GRCh38]
Chr22:30127303 [GRCh37]
Chr22:22q12.2		 uncertain significance
GRCh37/hg19 22q12.2(chr22:29986551-30157699)x3 copy number gain not provided [RCV003485244] Chr22:29986551..30157699 [GRCh37]
Chr22:22q12.2		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:820
Count of miRNA genes:411
Interacting mature miRNAs:449
Transcripts:ENST00000344318, ENST00000397781, ENST00000489010
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH45735  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372230,126,993 - 30,127,163UniSTSGRCh37
Build 362228,456,993 - 28,457,163RGDNCBI36
Celera2213,926,720 - 13,926,890RGD
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map22cen-q12.3UniSTS
HuRef2213,090,627 - 13,090,797UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2271 2768 1508 435 1624 275 4144 2058 3566 269 1304 1490 169 1190 2780 1
Low 168 223 218 189 327 190 213 139 168 150 156 123 5 1 14 8 5 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001003692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001318129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054325795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA312132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC004882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK292671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL160311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG285784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BK005198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ931527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU598307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR456353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR457393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DT217179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000344318   ⟹   ENSP00000344241
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2229,730,956 - 29,767,007 (-)Ensembl
RefSeq Acc Id: ENST00000489010
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2229,746,167 - 29,767,011 (-)Ensembl
RefSeq Acc Id: NM_001003692   ⟹   NP_001003692
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382229,730,956 - 29,767,007 (-)NCBI
GRCh372230,126,945 - 30,163,000 (-)NCBI
Build 362228,456,945 - 28,492,969 (-)NCBI Archive
Celera2213,926,672 - 13,962,699 (-)RGD
HuRef2213,090,579 - 13,126,584 (-)RGD
CHM1_12230,086,138 - 30,122,154 (-)NCBI
T2T-CHM13v2.02230,194,319 - 30,230,386 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001318129   ⟹   NP_001305058
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382229,730,956 - 29,767,007 (-)NCBI
CHM1_12230,086,138 - 30,122,185 (-)NCBI
T2T-CHM13v2.02230,194,319 - 30,230,386 (-)NCBI
Sequence:
RefSeq Acc Id: NM_019103   ⟹   NP_061976
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382229,730,956 - 29,767,007 (-)NCBI
GRCh372230,126,945 - 30,163,000 (-)NCBI
Build 362228,456,945 - 28,492,969 (-)NCBI Archive
Celera2213,926,672 - 13,962,699 (-)RGD
HuRef2213,090,579 - 13,126,584 (-)RGD
CHM1_12230,086,138 - 30,122,154 (-)NCBI
T2T-CHM13v2.02230,194,319 - 30,230,386 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054325795   ⟹   XP_054181770
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02230,194,319 - 30,230,905 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_061976   ⟸   NM_019103
- UniProtKB: A8K9F6 (UniProtKB/Swiss-Prot),   Q9UDW3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001003692   ⟸   NM_001003692
- UniProtKB: A8K9F6 (UniProtKB/Swiss-Prot),   Q9UDW3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001305058   ⟸   NM_001318129
- UniProtKB: A8K9F6 (UniProtKB/Swiss-Prot),   Q9UDW3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000344241   ⟸   ENST00000344318
RefSeq Acc Id: XP_054181770   ⟸   XM_054325795
- Peptide Label: isoform X1
- UniProtKB: Q9UDW3 (UniProtKB/Swiss-Prot),   A8K9F6 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9UDW3-F1-model_v2 AlphaFold Q9UDW3 1-170 view protein structure

Promoters
RGD ID:6799922
Promoter ID:HG_KWN:42263
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000332801,   ENST00000406782,   NM_001003684,   NM_001003692,   NM_013387,   NM_019103,   OTTHUMT00000322115
Position:
Human AssemblyChrPosition (strand)Source
Build 362228,492,376 - 28,493,472 (+)MPROMDB
RGD ID:13603652
Promoter ID:EPDNEW_H28010
Type:initiation region
Name:ZMAT5_1
Description:zinc finger matrin-type 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382229,767,007 - 29,767,067EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:28046 AgrOrtholog
COSMIC ZMAT5 COSMIC
Ensembl Genes ENSG00000100319 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000344318 ENTREZGENE
  ENST00000344318.4 UniProtKB/Swiss-Prot
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot
  Zinc finger, CCCH-type UniProtKB/Swiss-Prot
GTEx ENSG00000100319 GTEx
HGNC ID HGNC:28046 ENTREZGENE
Human Proteome Map ZMAT5 Human Proteome Map
InterPro U1-CZ_Znf_C2H2 UniProtKB/Swiss-Prot
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_CCCH UniProtKB/Swiss-Prot
  Znf_CCCH_sf UniProtKB/Swiss-Prot
KEGG Report hsa:55954 UniProtKB/Swiss-Prot
NCBI Gene 55954 ENTREZGENE
OMIM 619741 OMIM
PANTHER NUCLEASE-RELATED UniProtKB/Swiss-Prot
  ZINC FINGER MATRIN-TYPE PROTEIN 5 UniProtKB/Swiss-Prot
Pfam zf-CCCH UniProtKB/Swiss-Prot
  zf-U1 UniProtKB/Swiss-Prot
PharmGKB PA142670524 PharmGKB
PROSITE ZF_C3H1 UniProtKB/Swiss-Prot
SMART ZnF_C3H1 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot
  SSF90229 UniProtKB/Swiss-Prot
UniProt A8K9F6 ENTREZGENE
  Q9UDW3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A8K9F6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-16 ZMAT5  zinc finger matrin-type 5    zinc finger, matrin-type 5  Symbol and/or name change 5135510 APPROVED
2011-07-27 ZMAT5  zinc finger, matrin-type 5  ZMAT5  zinc finger, matrin type 5  Symbol and/or name change 5135510 APPROVED