SERINC4 (serine incorporator 4) - Rat Genome Database

Name: SERINC4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SERINC4 (serine incorporator 4) Homo sapiens

Analyze

Symbol:

SERINC4

Name:

serine incorporator 4

RGD ID:

1606056

HGNC Page

HGNC:32237

Description:

Predicted to be involved in phospholipid biosynthetic process. Predicted to be active in membrane.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

FLJ40363

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Mus musculus (house mouse):	Serinc4 (serine incorporator 4)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Rattus norvegicus (Norway rat):	Serinc4 (serine incorporator 4)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Chinchilla lanigera (long-tailed chinchilla):	Serinc4 (serine incorporator 4)	NCBI	Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):	SERINC4 (serine incorporator 4)	NCBI	Ortholog
Canis lupus familiaris (dog):	SERINC4 (serine incorporator 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Serinc4 (serine incorporator 4)	NCBI	Ortholog
Sus scrofa (pig):	SERINC4 (serine incorporator 4)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Chlorocebus sabaeus (green monkey):	SERINC4 (serine incorporator 4)	NCBI	Ortholog
Heterocephalus glaber (naked mole-rat):	Serinc4 (serine incorporator 4)	NCBI	Ortholog
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Serinc4 (serine incorporator 4)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	serinc4 (serine incorporator 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Mus musculus (house mouse):	Serinc4 (serine incorporator 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	TMS1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus laevis (African clawed frog):	serinc4.S	Alliance	DIOPT (Xenbase)
Xenopus tropicalis (tropical clawed frog):	serinc4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	43,794,162 - 43,800,220 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	43,794,162 - 43,800,220 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	44,086,360 - 44,092,418 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	41,874,457 - 41,879,547 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	15	20,976,627 - 20,981,717 (-)	NCBI		Celera
Cytogenetic Map	15	q15.3	NCBI
HuRef	15	20,909,234 - 20,915,157 (-)	NCBI		HuRef
CHM1_1	15	44,204,625 - 44,210,548 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	41,601,525 - 41,607,583 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (IAGP)

colorectal cancer (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

6-propyl-2-thiouracil (ISO)

acetamide (ISO)

benzo[a]pyrene (EXP)

bisphenol A (ISO)

CGP 52608 (EXP)

chlordecone (ISO)

folic acid (EXP)

gentamycin (ISO)

leflunomide (EXP)

methylisothiazolinone (EXP)

paracetamol (ISO)

potassium dichromate (ISO)

resveratrol (EXP)

Theaflavin 3,3'-digallate (EXP)

trichloroethene (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

phospholipid biosynthetic process (IEA)

Cellular Component

membrane (IBA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:14702039	PMID:16120614	PMID:21873635

Genomics

Comparative Map Data

SERINC4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	43,794,162 - 43,800,220 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	43,794,162 - 43,800,220 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	44,086,360 - 44,092,418 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	41,874,457 - 41,879,547 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	15	20,976,627 - 20,981,717 (-)	NCBI		Celera
Cytogenetic Map	15	q15.3	NCBI
HuRef	15	20,909,234 - 20,915,157 (-)	NCBI		HuRef
CHM1_1	15	44,204,625 - 44,210,548 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	41,601,525 - 41,607,583 (-)	NCBI		T2T-CHM13v2.0

Serinc4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	121,281,658 - 121,287,245 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	121,269,540 - 121,287,262 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	121,451,177 - 121,456,764 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	121,439,059 - 121,456,781 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	121,276,913 - 121,282,500 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	121,142,618 - 121,148,205 (-)	NCBI		MGSCv36	mm8
Celera	2	122,601,934 - 122,607,554 (-)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	60.39	NCBI

Serinc4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	128,882,617 - 128,888,376 (-)	NCBI		GRCr8
mRatBN7.2	3	108,428,896 - 108,434,778 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	108,428,897 - 108,434,778 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	112,103,330 - 112,109,211 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	120,698,851 - 120,704,732 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	118,359,256 - 118,365,138 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	113,417,592 - 113,423,473 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	113,417,593 - 113,423,473 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	119,957,470 - 119,963,698 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	108,257,024 - 108,262,904 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	107,330,102 - 107,335,982 (-)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

Serinc4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955416	10,255,269 - 10,257,996 (-)	NCBI	ChiLan1.0	ChiLan1.0

SERINC4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	33,046,824 - 33,051,823 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	37,208,420 - 37,214,122 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	22,755,169 - 22,760,184 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	40,845,167 - 40,850,960 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	40,845,167 - 40,850,960 (-)	Ensembl	panpan1.1		panPan2

SERINC4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	10,537,370 - 10,541,725 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	10,538,211 - 10,542,740 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	10,595,741 - 10,601,874 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	10,673,893 - 10,680,025 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	10,674,757 - 10,679,286 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	10,583,015 - 10,589,147 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	10,704,943 - 10,711,076 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	10,824,678 - 10,830,810 (-)	NCBI		UU_Cfam_GSD_1.0

Serinc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	89,006,030 - 89,012,033 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	6,853,921 - 6,860,164 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	6,854,102 - 6,860,106 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SERINC4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	127,760,175 - 127,765,798 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	127,760,374 - 127,764,787 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	142,591,569 - 142,594,297 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SERINC4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	39,244,701 - 39,249,986 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	39,244,783 - 39,249,776 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	101,741,771 - 101,747,633 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Serinc4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624804	10,819,222 - 10,823,107 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 15q15.2-15.3(chr15:42566761-43847106)x1	copy number loss	See cases [RCV000137921]	Chr15:42566761..43847106 [GRCh38] Chr15:42858959..44139304 [GRCh37] Chr15:40646251..41926596 [NCBI36] Chr15:15q15.2-15.3	likely pathogenic
GRCh38/hg38 15q15.3-21.1(chr15:43696563-44541320)x1	copy number loss	See cases [RCV000143109]	Chr15:43696563..44541320 [GRCh38] Chr15:43988761..44833518 [GRCh37] Chr15:41776053..42620810 [NCBI36] Chr15:15q15.3-21.1	uncertain significance
GRCh37/hg19 15q15.1-26.3(chr15:41745084-102354798)x4	copy number gain	See cases [RCV000447123]	Chr15:41745084..102354798 [GRCh37] Chr15:15q15.1-26.3	pathogenic
GRCh37/hg19 15q15.2-21.2(chr15:42850434-49592633)x1	copy number loss	See cases [RCV000447035]	Chr15:42850434..49592633 [GRCh37] Chr15:15q15.2-21.2	pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:20733395-102511616)x4	copy number gain	See cases [RCV000447765]	Chr15:20733395..102511616 [GRCh37] Chr15:15q11.2-26.3	pathogenic
GRCh37/hg19 15q15.1-21.2(chr15:41689327-52446981)x1	copy number loss	See cases [RCV000448968]	Chr15:41689327..52446981 [GRCh37] Chr15:15q15.1-21.2	pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112)x3	copy number gain	See cases [RCV000510717]	Chr15:22770422..102429112 [GRCh37] Chr15:15q11.2-26.3	pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112)	copy number gain	See cases [RCV000512019]	Chr15:22770422..102429112 [GRCh37] Chr15:15q11.2-26.3	pathogenic
Single allele	duplication	not provided [RCV000677926]	Chr15:31115047..102354857 [GRCh37] Chr15:15q13.2-26.3	pathogenic
GRCh37/hg19 15q15.3-21.3(chr15:43759773-53252240)x1	copy number loss	not provided [RCV000683686]	Chr15:43759773..53252240 [GRCh37] Chr15:15q15.3-21.3	pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20071673-102461162)x3	copy number gain	not provided [RCV000751156]	Chr15:20071673..102461162 [GRCh37] Chr15:15q11.1-26.3	pathogenic
GRCh37/hg19 15q15.3-21.1(chr15:44038893-44838835)x1	copy number loss	not provided [RCV000751289]	Chr15:44038893..44838835 [GRCh37] Chr15:15q15.3-21.1	uncertain significance
GRCh37/hg19 15q11.1-26.3(chr15:20016811-102493540)x3	copy number gain	not provided [RCV000751155]	Chr15:20016811..102493540 [GRCh37] Chr15:15q11.1-26.3	pathogenic
GRCh37/hg19 15q15.2-15.3(chr15:43420601-44198616)x3	copy number gain	not provided [RCV001006684]	Chr15:43420601..44198616 [GRCh37] Chr15:15q15.2-15.3	uncertain significance
NC_000015.9:g.(?_32964879)_(91358519_?)dup	duplication	Bloom syndrome [RCV001343104]\|Familial colorectal cancer [RCV001325176]	Chr15:32964879..91358519 [GRCh37] Chr15:15q13.3-26.1	uncertain significance
GRCh37/hg19 15q15.2-21.2(chr15:42850434-49592633)	copy number loss	not specified [RCV002052466]	Chr15:42850434..49592633 [GRCh37] Chr15:15q15.2-21.2	pathogenic
GRCh37/hg19 15q15.2-15.3(chr15:43215243-44632384)x1	copy number loss	not provided [RCV001829144]	Chr15:43215243..44632384 [GRCh37] Chr15:15q15.2-15.3	uncertain significance
Single allele	deletion	not provided [RCV003448697]	Chr15:41321409..51718601 [GRCh37] Chr15:15q15.1-21.2	pathogenic
GRCh37/hg19 15q11.2-21.2(chr15:22770421-50347130)x3	copy number gain	not specified [RCV003987108]	Chr15:22770421..50347130 [GRCh37] Chr15:15q11.2-21.2	pathogenic
GRCh37/hg19 15q15.3(chr15:43988438-44216507)x3	copy number gain	not provided [RCV003885469]	Chr15:43988438..44216507 [GRCh37] Chr15:15q15.3	uncertain significance

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	3876
Count of miRNA genes:	748
Interacting mature miRNAs:	863
Transcripts:	ENST00000249714, ENST00000299969, ENST00000319327, ENST00000412697, ENST00000448553, ENST00000457418, ENST00000476490
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region

SHGC-84907

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,091,816 - 44,092,102	UniSTS	GRCh37
Build 36	15	41,879,108 - 41,879,394	RGD	NCBI36
Celera	15	20,981,278 - 20,981,564	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,914,678 - 20,914,964	UniSTS
TNG Radiation Hybrid Map	15	13141.0	UniSTS

D15S797

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,087,252 - 44,087,522	UniSTS	GRCh37
Build 36	15	41,874,544 - 41,874,814	RGD	NCBI36
Celera	15	20,976,714 - 20,976,984	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,114 - 20,910,384	UniSTS

ECD03706

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,087,177 - 44,087,963	UniSTS	GRCh37
Build 36	15	41,874,469 - 41,875,255	RGD	NCBI36
Celera	15	20,976,639 - 20,977,425	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,039 - 20,910,825	UniSTS

ECD03766

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,091,940 - 44,092,724	UniSTS	GRCh37
Build 36	15	41,879,232 - 41,880,016	RGD	NCBI36
Celera	15	20,981,402 - 20,982,186	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,914,802 - 20,915,586	UniSTS

ECD03945

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,092,802 - 44,093,581	UniSTS	GRCh37
Build 36	15	41,880,094 - 41,880,873	RGD	NCBI36
Celera	15	20,982,264 - 20,983,043	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,915,664 - 20,916,443	UniSTS

ECD04236

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,091,075 - 44,091,845	UniSTS	GRCh37
Build 36	15	41,878,367 - 41,879,137	RGD	NCBI36
Celera	15	20,980,537 - 20,981,307	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,913,937 - 20,914,707	UniSTS

ECD09002

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,088,266 - 44,088,905	UniSTS	GRCh37
Build 36	15	41,875,558 - 41,876,197	RGD	NCBI36
Celera	15	20,977,728 - 20,978,367	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,911,128 - 20,911,767	UniSTS

ECD09564

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,088,941 - 44,089,566	UniSTS	GRCh37
Build 36	15	41,876,233 - 41,876,858	RGD	NCBI36
Celera	15	20,978,403 - 20,979,028	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,911,803 - 20,912,428	UniSTS

ECD18037

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,090,550 - 44,090,925	UniSTS	GRCh37
Build 36	15	41,877,842 - 41,878,217	RGD	NCBI36
Celera	15	20,980,012 - 20,980,387	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,913,412 - 20,913,787	UniSTS

ECD19243

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,089,889 - 44,090,217	UniSTS	GRCh37
Build 36	15	41,877,181 - 41,877,509	RGD	NCBI36
Celera	15	20,979,351 - 20,979,679	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,912,751 - 20,913,079	UniSTS

REN37694

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,086,558 - 44,086,803	UniSTS	GRCh37
Build 36	15	41,873,850 - 41,874,095	RGD	NCBI36
Celera	15	20,976,020 - 20,976,265	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,909,420 - 20,909,665	UniSTS

REN37695

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,086,772 - 44,087,013	UniSTS	GRCh37
Build 36	15	41,874,064 - 41,874,305	RGD	NCBI36
Celera	15	20,976,234 - 20,976,475	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,909,634 - 20,909,875	UniSTS

REN37696

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,086,980 - 44,087,226	UniSTS	GRCh37
Build 36	15	41,874,272 - 41,874,518	RGD	NCBI36
Celera	15	20,976,442 - 20,976,688	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,909,842 - 20,910,088	UniSTS

REN37697

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,087,212 - 44,087,465	UniSTS	GRCh37
Build 36	15	41,874,504 - 41,874,757	RGD	NCBI36
Celera	15	20,976,674 - 20,976,927	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,074 - 20,910,327	UniSTS

REN37698

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,087,460 - 44,087,684	UniSTS	GRCh37
Build 36	15	41,874,752 - 41,874,976	RGD	NCBI36
Celera	15	20,976,922 - 20,977,146	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,322 - 20,910,546	UniSTS

REN37699

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,087,657 - 44,087,905	UniSTS	GRCh37
Build 36	15	41,874,949 - 41,875,197	RGD	NCBI36
Celera	15	20,977,119 - 20,977,367	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,519 - 20,910,767	UniSTS

REN37700

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,087,871 - 44,088,120	UniSTS	GRCh37
Build 36	15	41,875,163 - 41,875,412	RGD	NCBI36
Celera	15	20,977,333 - 20,977,582	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,733 - 20,910,982	UniSTS

REN37701

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,088,099 - 44,088,346	UniSTS	GRCh37
Build 36	15	41,875,391 - 41,875,638	RGD	NCBI36
Celera	15	20,977,561 - 20,977,808	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,961 - 20,911,208	UniSTS

REN37702

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,088,335 - 44,088,590	UniSTS	GRCh37
Build 36	15	41,875,627 - 41,875,882	RGD	NCBI36
Celera	15	20,977,797 - 20,978,052	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,911,197 - 20,911,452	UniSTS

REN37703

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,088,576 - 44,088,808	UniSTS	GRCh37
Build 36	15	41,875,868 - 41,876,100	RGD	NCBI36
Celera	15	20,978,038 - 20,978,270	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,911,438 - 20,911,670	UniSTS

REN37704

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,088,785 - 44,089,031	UniSTS	GRCh37
Build 36	15	41,876,077 - 41,876,323	RGD	NCBI36
Celera	15	20,978,247 - 20,978,493	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,911,647 - 20,911,893	UniSTS

REN37705

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,089,008 - 44,089,255	UniSTS	GRCh37
Build 36	15	41,876,300 - 41,876,547	RGD	NCBI36
Celera	15	20,978,470 - 20,978,717	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,911,870 - 20,912,117	UniSTS

REN37706

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,089,204 - 44,089,472	UniSTS	GRCh37
Build 36	15	41,876,496 - 41,876,764	RGD	NCBI36
Celera	15	20,978,666 - 20,978,934	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,912,066 - 20,912,334	UniSTS

REN37707

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,089,385 - 44,089,626	UniSTS	GRCh37
Build 36	15	41,876,677 - 41,876,918	RGD	NCBI36
Celera	15	20,978,847 - 20,979,088	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,912,247 - 20,912,488	UniSTS

REN37708

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,089,517 - 44,089,762	UniSTS	GRCh37
Build 36	15	41,876,809 - 41,877,054	RGD	NCBI36
Celera	15	20,978,979 - 20,979,224	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,912,379 - 20,912,624	UniSTS

REN37709

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,089,739 - 44,089,994	UniSTS	GRCh37
Build 36	15	41,877,031 - 41,877,286	RGD	NCBI36
Celera	15	20,979,201 - 20,979,456	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,912,601 - 20,912,856	UniSTS

REN37710

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,089,971 - 44,090,220	UniSTS	GRCh37
Build 36	15	41,877,263 - 41,877,512	RGD	NCBI36
Celera	15	20,979,433 - 20,979,682	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,912,833 - 20,913,082	UniSTS

REN37711

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,090,544 - 44,090,768	UniSTS	GRCh37
Build 36	15	41,877,836 - 41,878,060	RGD	NCBI36
Celera	15	20,980,006 - 20,980,230	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,913,406 - 20,913,630	UniSTS

REN37712

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,090,746 - 44,091,008	UniSTS	GRCh37
Build 36	15	41,878,038 - 41,878,300	RGD	NCBI36
Celera	15	20,980,208 - 20,980,470	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,913,608 - 20,913,870	UniSTS

REN37713

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,090,955 - 44,091,214	UniSTS	GRCh37
Build 36	15	41,878,247 - 41,878,506	RGD	NCBI36
Celera	15	20,980,417 - 20,980,676	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,913,817 - 20,914,076	UniSTS

REN37714

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,091,195 - 44,091,428	UniSTS	GRCh37
Build 36	15	41,878,487 - 41,878,720	RGD	NCBI36
Celera	15	20,980,657 - 20,980,890	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,914,057 - 20,914,290	UniSTS

REN37715

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,091,400 - 44,091,645	UniSTS	GRCh37
Build 36	15	41,878,692 - 41,878,937	RGD	NCBI36
Celera	15	20,980,862 - 20,981,107	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,914,262 - 20,914,507	UniSTS

REN37716

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,091,622 - 44,091,881	UniSTS	GRCh37
Build 36	15	41,878,914 - 41,879,173	RGD	NCBI36
Celera	15	20,981,084 - 20,981,343	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,914,484 - 20,914,743	UniSTS

REN37717

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,091,876 - 44,092,117	UniSTS	GRCh37
Build 36	15	41,879,168 - 41,879,409	RGD	NCBI36
Celera	15	20,981,338 - 20,981,579	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,914,738 - 20,914,979	UniSTS

REN37718

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,092,092 - 44,092,343	UniSTS	GRCh37
Build 36	15	41,879,384 - 41,879,635	RGD	NCBI36
Celera	15	20,981,554 - 20,981,805	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,914,954 - 20,915,205	UniSTS

REN37719

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,092,322 - 44,092,586	UniSTS	GRCh37
Build 36	15	41,879,614 - 41,879,878	RGD	NCBI36
Celera	15	20,981,784 - 20,982,048	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,915,184 - 20,915,448	UniSTS

REN37720

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,092,529 - 44,092,779	UniSTS	GRCh37
Build 36	15	41,879,821 - 41,880,071	RGD	NCBI36
Celera	15	20,981,991 - 20,982,241	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,915,391 - 20,915,641	UniSTS

REN37721

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,092,759 - 44,092,987	UniSTS	GRCh37
Build 36	15	41,880,051 - 41,880,279	RGD	NCBI36
Celera	15	20,982,221 - 20,982,449	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,915,621 - 20,915,849	UniSTS

REN37722

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,092,983 - 44,093,244	UniSTS	GRCh37
Build 36	15	41,880,275 - 41,880,536	RGD	NCBI36
Celera	15	20,982,445 - 20,982,706	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,915,845 - 20,916,106	UniSTS

REN37723

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,093,220 - 44,093,485	UniSTS	GRCh37
Build 36	15	41,880,512 - 41,880,777	RGD	NCBI36
Celera	15	20,982,682 - 20,982,947	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,916,082 - 20,916,347	UniSTS

REN37724

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,093,469 - 44,093,693	UniSTS	GRCh37
Build 36	15	41,880,761 - 41,880,985	RGD	NCBI36
Celera	15	20,982,931 - 20,983,155	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,916,331 - 20,916,555	UniSTS

REN37725

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,093,666 - 44,093,893	UniSTS	GRCh37
Build 36	15	41,880,958 - 41,881,185	RGD	NCBI36
Celera	15	20,983,128 - 20,983,355	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,916,528 - 20,916,755	UniSTS

REN37726

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,093,839 - 44,094,091	UniSTS	GRCh37
Build 36	15	41,881,131 - 41,881,383	RGD	NCBI36
Celera	15	20,983,301 - 20,983,553	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,916,701 - 20,916,953	UniSTS

RH41787

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,086,644 - 44,086,759	UniSTS	GRCh37
Build 36	15	41,873,936 - 41,874,051	RGD	NCBI36
Celera	15	20,976,106 - 20,976,221	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,909,506 - 20,909,621	UniSTS
GeneMap99-GB4 RH Map	15	157.3	UniSTS

WI-18240

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,088,108 - 44,088,257	UniSTS	GRCh37
Build 36	15	41,875,400 - 41,875,549	RGD	NCBI36
Celera	15	20,977,570 - 20,977,719	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,970 - 20,911,119	UniSTS
GeneMap99-GB4 RH Map	15	169.99	UniSTS
Whitehead-RH Map	15	119.9	UniSTS
NCBI RH Map	15	238.1	UniSTS

SHGC-33350

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	148,334,605 - 148,334,729	UniSTS	GRCh37
GRCh37	15	44,093,925 - 44,094,049	UniSTS	GRCh37
Build 36	7	147,965,538 - 147,965,662	RGD	NCBI36
Celera	7	143,005,358 - 143,005,482	RGD
Celera	15	20,983,387 - 20,983,511	UniSTS
Cytogenetic Map	7	q36.1	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
Cytogenetic Map	15	q	UniSTS
HuRef	7	142,413,719 - 142,413,843	UniSTS
HuRef	15	20,916,787 - 20,916,911	UniSTS
CRA_TCAGchr7v2	7	147,672,921 - 147,673,045	UniSTS
GeneMap99-GB4 RH Map	15	160.02	UniSTS
Whitehead-RH Map	15	116.3	UniSTS
GeneMap99-G3 RH Map	15	958.0	UniSTS

RH47782

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,088,065 - 44,088,237	UniSTS	GRCh37
Build 36	15	41,875,357 - 41,875,529	RGD	NCBI36
Celera	15	20,977,527 - 20,977,699	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,927 - 20,911,099	UniSTS
GeneMap99-GB4 RH Map	15	159.81	UniSTS
NCBI RH Map	15	169.1	UniSTS

stSG627953

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,087,944 - 44,089,415	UniSTS	GRCh37
Build 36	15	41,875,236 - 41,876,707	RGD	NCBI36
Celera	15	20,977,406 - 20,978,877	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,806 - 20,912,277	UniSTS

stSG627955

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,090,758 - 44,091,093	UniSTS	GRCh37
Build 36	15	41,878,050 - 41,878,385	RGD	NCBI36
Celera	15	20,980,220 - 20,980,555	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,913,620 - 20,913,955	UniSTS

stSG627956

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,091,130 - 44,092,222	UniSTS	GRCh37
Build 36	15	41,878,422 - 41,879,514	RGD	NCBI36
Celera	15	20,980,592 - 20,981,684	RGD
Cytogenetic Map	15	q	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,913,992 - 20,915,084	UniSTS

stSG627957

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,092,348 - 44,093,448	UniSTS	GRCh37
Build 36	15	41,879,640 - 41,880,740	RGD	NCBI36
Celera	15	20,981,810 - 20,982,910	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,915,210 - 20,916,310	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	entire extraembryonic component
High
Medium
Low	11	1	7	2	31	3	4	1	7	1	4	23
Below cutoff	40	9	36	27	93	30	26	43	47	26	55	61	2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001258031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001258032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC018512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK097682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC112349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC136669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX647438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ103711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000299969 ⟹ ENSP00000299969

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,794,162 - 43,800,132 (-)	Ensembl

RefSeq Acc Id:

ENST00000319327 ⟹ ENSP00000319796

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,794,162 - 43,800,220 (-)	Ensembl

RefSeq Acc Id:

ENST00000412697 ⟹ ENSP00000408781

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,794,230 - 43,799,127 (-)	Ensembl

RefSeq Acc Id:

ENST00000448553 ⟹ ENSP00000399074

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,794,162 - 43,799,133 (-)	Ensembl

RefSeq Acc Id:

ENST00000457418 ⟹ ENSP00000402868

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,794,162 - 43,800,097 (-)	Ensembl

RefSeq Acc Id:

ENST00000476490

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,796,730 - 43,799,095 (-)	Ensembl

RefSeq Acc Id:

NM_001258031 ⟹ NP_001244960

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	43,794,162 - 43,800,220 (-)	NCBI
GRCh37	15	44,086,372 - 44,092,295 (-)	NCBI
HuRef	15	20,909,234 - 20,915,157 (-)	NCBI
CHM1_1	15	44,204,625 - 44,210,548 (-)	NCBI
T2T-CHM13v2.0	15	41,601,525 - 41,607,583 (-)	NCBI

Sequence:

show sequence

AGAGAACAGCCTGAGTGGCCGCAGTGTTGAGGCCCTAAGGACAAAGCTCCTTCACAGGGCATTT
GCATTTACCGCAACCTGGAGGTCAGTGTTCTCTTCCGGACGTCTCCATTCTGCCCGGGACCGGG
TGCTCAGCCCCAACACAGTGGCAGTCCAATGGGCTGAGGACAGAAGCAACTGCTGCTCTCATCT
GCCTTCCATCTGGTGGACCTAAGCCTAATCCCTGGGACAAGGATGGTGGGTGCCAAGGCCGGCC
CCAGCCCCGGCACCTCCCTGGGCCTGGCACAGCAGCACAGCGGAGGCAGCAGTGTCCTAGTGAA
AAGTCCCTTCTGTCAGGTGTGCTGCTGTGGGCCTGCTCCTTGTGCCAGCTGCTGCCACTCTAGG
TGGCCCTCTCTCACCGCATCCACTTGCAGCCGCCTGTTCTACATCCTCCTCCATGTGGGGGCCT
CAGCAATCTGCTGCCTCCTGCTGTCAAGGACAGTAGTGGAAAGGGTGTGGGGCAAGACACACAG
GATCCAGATGCCCTCGGGGTTGTGTGCCCACCTGTTTGGCCTCTCTGACTGTCCAGTGCTCAGT
GGCTCTGGGGCTGTGTACCGAGTATGTGCAGGAACCGCCACCTTCCACCTGCTGCAGGCTGTGT
TGCTGGTCCACCTCCACTCCCCCACCAGCCCGCGGGCACAGCTGCATAATAGCTTCTGGCTCCT
CAAGCTGCTGTTCCTGTTAGGTCTCTGTGCTATTGCCTTCTGCATTCCTGATGAGCATCTCTTC
CCAGCATGGCATTACATTGGCATCTGTGGAGGCTTTGCATTCATCCTACTGCAGTTGGTGCTTA
TTACAGCTTTTGCCCATTCCTGGAACAAGAACTGGCAGACAGGTGCAGCTCAAGACTGTAGCTG
GTTCCTGGCTGTCCTGCTGGCCACCCTAGGATTCTACAGCATGGCAGGTGTGGGAGCTGTGCTC
CTATTCCACTATTATACACACCCAGCTGGCTGCCTGCTTAACAAGATGCTCCTCAGTCTGCACC
TTTGCTTCTGTGGCCTCATCTCCTTCCTCTCCATCGCTCCTTGCATCCGCCTCAAGCAACCCCG
CTCTGGCCTCCTACAAGCTTCTGTCATCAGCTGCTATATCATGTATCTGACTTTCTCTGCACTG
TCCAGCCGTCCTCCAGAGAGAGTAATCCTTCAAGGACAGAATCACACCCTGTGCCTGCCTGGCC
TGAGTAAAATGGAACCCCAAACACCAGATATCTCTCTAGCAATGCTGAGTGCTAGCATCATGTA
TGCTTGTGTGCTTTTTGCTTGCAATGAGGCCTCCTACCTGGCTGAGGTATTTGGACCCCTGTGG
ATTGTCAAGGTTTACAGCTATGAGTTTCAGAAGCCCTCACTGTGTTTCTGCTGCCCTGAAACAG
TGGAGGCAGACAAAGGGCAAAGGGGTGGGGCTGCGAGGCCAGCTGACCAAGAAACCCCTCCAGC
TCCTCCAGTCCAAGTCCAGCATCTTTCCTACAACTATTCTGCCTTCCACTTCGTCTTCTTCCTT
GCCTCACTCTATGTCATGGTTACCCTTACCAACTGGTTCAGCTATGAGGGAGCAGAACTGGAAA
AGACCTTCATCAAGGGTAGCTGGGCCACCTTCTGGGTCAAGGTTGCCTCATGCTGGGCCTGCGT
ACTCCTCTATCTGGGGCTGTTACTGGCACCACTCTGTTGGCCCCCCACCCAGAAACCCCAGCCC
CTTATCTTGAGGCGCCGCCGCCACCGCATCATATCCCCAGATAACAAATATCCTCCAGTCTAAG
TCCTTTTCACAAACTGGGGTTCCCCTGACATTGTACTCCTAGAGTTGGCTCAAGGGGAGCTGTC
CAGCCCAGCTCAATACCTCAAGGACACACAGGGAGTTATCTCCGTTTGGGCTGAAGTCAATACT
ATGAACTGGAAGAAGTGGTCAAACACAGTCTAATGTGCTGGGCAGAGTGTCTGACTCACTGGAG
CTACTGTTACATCTGCATCCCAGCTCAAGAGCCTAACACCCAAATCAGCAGCTCAAAGAACCAC
CGCTGATCCCAGCAGACAGTGTGGCACCAGCCCTTTCCTGGCTCTTGGGCTGGAAGTGGGGGTG
GGGAAAGACCAACAGGGACTGAAGACTCGGCTCTGCCCTTGGAGAAAGGAAAATAAGGAGTTCA
GCCCTGGGCACACGGATATAAGAAGCCCAGAACCACAGAACAAACCAGGGCATAGAAGAAAGGA
GCACAGAGGCTACCCCAGGTTTTAATCCTGATTTTGAGGTCAAGGGAAGCGGGAAGACAAAACC
ACCCTCATTCCATGAGGAATGACAGAAGAGAAAGTGAACGCTTGACAGCAGCTGACCACGGGAA
GTCGGTGAGCAGCAGGATTTTTTGGCCAACTTTCAAGCAGACGAACAAACTGAGGAAGAATGAG
GAAAAGAGGCATAAACACAGATCTTGCAGCATTCACTCTTAGGCCAACTCCATCCTAGAGATGG
TGTTCAAGGGTGGGGAACAAAAATCACAGAAAAGAAGTCTCTATGGTTCTTAGAGGATTCCTCT
ACTGCATATCCGGAGTACTTGTTTGGTTGTCATTGTATAATAAAGGCTTCTTCTGTGATGTTTC
ACTTA

hide sequence

RefSeq Acc Id:

NM_001258032 ⟹ NP_001244961

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	43,794,162 - 43,800,220 (-)	NCBI
GRCh37	15	44,086,372 - 44,092,295 (-)	NCBI
HuRef	15	20,909,234 - 20,915,157 (-)	NCBI
CHM1_1	15	44,204,625 - 44,210,548 (-)	NCBI
T2T-CHM13v2.0	15	41,601,525 - 41,607,583 (-)	NCBI

Sequence:

show sequence

AGAGAACAGCCTGAGTGGCCGCAGTGTTGAGGCCCTAAGGACAAAGCTCCTTCACAGGGCATTT
GCATTTACCGCAACCTGGAGGTCAGTGTTCTCTTCCGGACGTCTCCATTCTGCCCGGGACCGGG
TGCTCAGCCCCAACACAGTGGCAGTCCAATGGGCTGAGGACAGAAGCAACTGCTGCTCTCATCT
GCCTTCCATCTGGTGGACCTAAGCCTAATCCCTGGGACAAGGATGGTGGGTGCCAAGGCCGGCC
CCAGCCCCGGCACCTCCCTGGGCCTGGCACAGCAGCACAGCGGAGGCAGCAGTGTCCTAGTGAA
AAGTCCCTTCTGTCAGCAAGTCTCCACCTCGCTGCCTTGCATCTGCTCTACTCCCAGGTGTGCT
GCTGTGGGCCTGCTCCTTGTGCCAGCTGCTGCCACTCTAGGTGGCCCTCTCTCACCGCATCCAC
TTGCAGCCGCCTGTTCTACATCCTCCTCCATGTGGGGGCCTCAGCAATCTGCTGCCTCCTGCTG
TCAAGGACAGTAGTGGAAAGGGTGTGGGGCAAGACACACAGGATCCAGATGCCCTCGGGGTTGT
GTGCCCACCTGTTTGGCCTCTCTGACTGTCCAGTGCTCAGTGGCTCTGGGGCTGTGTACCGAGT
ATGTGCAGGAACCGCCACCTTCCACCTGCTGCAGGCTGTGTTGCTGGTCCACCTCCACTCCCCC
ACCAGCCCGCGGGCACAGCTGCATAATAGCTTCTGGCTCCTCAAGCTGCTGTTCCTGTTAGGTC
TCTGTGCTATTGCCTTCTGCATTCCTGATGAGCATCTCTTCCCAGCATGGCATTACATTGGCAT
CTGTGGAGGCTTTGCATTCATCCTACTGCAGTTGGTGCTTATTACAGCTTTTGCCCATTCCTGG
AACAAGAACTGAGCAACCCCGCTCTGGCCTCCTACAAGCTTCTGTCATCAGCTGCTATATCATG
TATCTGACTTTCTCTGCACTGTCCAGCCGTCCTCCAGAGAGAGTAATCCTTCAAGGACAGAATC
ACACCCTGTGCCTGCCTGGCCTGAGTAAAATGGAACCCCAAACACCAGATATCTCTCTAGCAAT
GCTGAGTGCTAGCATCATGTATGCTTGTGTGCTTTTTGCTTGCAATGAGGCCTCCTACCTGGCT
GAGGTATTTGGACCCCTGTGGATTGTCAAGGTTTACAGCTATGAGTTTCAGAAGCCCTCACTGT
GTTTCTGCTGCCCTGAAACAGTGGAGGCAGACAAAGGGCAAAGGGGTGGGGCTGCGAGGCCAGC
TGACCAAGAAACCCCTCCAGCTCCTCCAGTCCAAGTCCAGCATCTTTCCTACAACTATTCTGCC
TTCCACTTCGTCTTCTTCCTTGCCTCACTCTATGTCATGGTTACCCTTACCAACTGGTTCAGCT
ATGAGGGAGCAGAACTGGAAAAGACCTTCATCAAGGGTAGCTGGGCCACCTTCTGGGTCAAGGT
TGCCTCATGCTGGGCCTGCGTACTCCTCTATCTGGGGCTGTTACTGGCACCACTCTGTTGGCCC
CCCACCCAGAAACCCCAGCCCCTTATCTTGAGGCGCCGCCGCCACCGCATCATATCCCCAGATA
ACAAATATCCTCCAGTCTAAGTCCTTTTCACAAACTGGGGTTCCCCTGACATTGTACTCCTAGA
GTTGGCTCAAGGGGAGCTGTCCAGCCCAGCTCAATACCTCAAGGACACACAGGGAGTTATCTCC
GTTTGGGCTGAAGTCAATACTATGAACTGGAAGAAGTGGTCAAACACAGTCTAATGTGCTGGGC
AGAGTGTCTGACTCACTGGAGCTACTGTTACATCTGCATCCCAGCTCAAGAGCCTAACACCCAA
ATCAGCAGCTCAAAGAACCACCGCTGATCCCAGCAGACAGTGTGGCACCAGCCCTTTCCTGGCT
CTTGGGCTGGAAGTGGGGGTGGGGAAAGACCAACAGGGACTGAAGACTCGGCTCTGCCCTTGGA
GAAAGGAAAATAAGGAGTTCAGCCCTGGGCACACGGATATAAGAAGCCCAGAACCACAGAACAA
ACCAGGGCATAGAAGAAAGGAGCACAGAGGCTACCCCAGGTTTTAATCCTGATTTTGAGGTCAA
GGGAAGCGGGAAGACAAAACCACCCTCATTCCATGAGGAATGACAGAAGAGAAAGTGAACGCTT
GACAGCAGCTGACCACGGGAAGTCGGTGAGCAGCAGGATTTTTTGGCCAACTTTCAAGCAGACG
AACAAACTGAGGAAGAATGAGGAAAAGAGGCATAAACACAGATCTTGCAGCATTCACTCTTAGG
CCAACTCCATCCTAGAGATGGTGTTCAAGGGTGGGGAACAAAAATCACAGAAAAGAAGTCTCTA
TGGTTCTTAGAGGATTCCTCTACTGCATATCCGGAGTACTTGTTTGGTTGTCATTGTATAATAA
AGGCTTCTTCTGTGATGTTTCACTTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001244960	(Get FASTA)	NCBI Sequence Viewer
	NP_001244961	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A6NH21	(Get FASTA)	NCBI Sequence Viewer
	AAI36670	(Get FASTA)	NCBI Sequence Viewer
	AAZ80298	(Get FASTA)	NCBI Sequence Viewer
	EAW77244	(Get FASTA)	NCBI Sequence Viewer
	EAW77245	(Get FASTA)	NCBI Sequence Viewer
	EAW77246	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000299969.6
	ENSP00000319796
	ENSP00000319796.6
	ENSP00000399074.1
	ENSP00000402868.1
	ENSP00000408781.1

RefSeq Acc Id:	NP_001244960 ⟸ NM_001258031
- Peptide Label:	isoform 1
- UniProtKB:	B2RN41 (UniProtKB/Swiss-Prot), Q3YL75 (UniProtKB/Swiss-Prot), A6NH21 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MVGAKAGPSPGTSLGLAQQHSGGSSVLVKSPFCQVCCCGPAPCASCCHSRWPSLTASTCSRLFY ILLHVGASAICCLLLSRTVVERVWGKTHRIQMPSGLCAHLFGLSDCPVLSGSGAVYRVCAGTAT FHLLQAVLLVHLHSPTSPRAQLHNSFWLLKLLFLLGLCAIAFCIPDEHLFPAWHYIGICGGFAF ILLQLVLITAFAHSWNKNWQTGAAQDCSWFLAVLLATLGFYSMAGVGAVLLFHYYTHPAGCLLN KMLLSLHLCFCGLISFLSIAPCIRLKQPRSGLLQASVISCYIMYLTFSALSSRPPERVILQGQN HTLCLPGLSKMEPQTPDISLAMLSASIMYACVLFACNEASYLAEVFGPLWIVKVYSYEFQKPSL CFCCPETVEADKGQRGGAARPADQETPPAPPVQVQHLSYNYSAFHFVFFLASLYVMVTLTNWFS YEGAELEKTFIKGSWATFWVKVASCWACVLLYLGLLLAPLCWPPTQKPQPLILRRRRHRIISPD NKYPPV hide sequence

RefSeq Acc Id:	NP_001244961 ⟸ NM_001258032
- Peptide Label:	isoform 3
- UniProtKB:	A6NH21 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSISSQHGITLASVEALHSSYCSWCLLQLLPIPGTRTEQPRSGLLQASVISCYIMYLTFSALSS RPPERVILQGQNHTLCLPGLSKMEPQTPDISLAMLSASIMYACVLFACNEASYLAEVFGPLWIV KVYSYEFQKPSLCFCCPETVEADKGQRGGAARPADQETPPAPPVQVQHLSYNYSAFHFVFFLAS LYVMVTLTNWFSYEGAELEKTFIKGSWATFWVKVASCWACVLLYLGLLLAPLCWPPTQKPQPLI LRRRRHRIISPDNKYPPV hide sequence

RefSeq Acc Id:

ENSP00000408781 ⟸ ENST00000412697

RefSeq Acc Id:

ENSP00000299969 ⟸ ENST00000299969

RefSeq Acc Id:

ENSP00000402868 ⟸ ENST00000457418

RefSeq Acc Id:

ENSP00000399074 ⟸ ENST00000448553

RefSeq Acc Id:

ENSP00000319796 ⟸ ENST00000319327

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A6NH21-F1-model_v2	AlphaFold	A6NH21	1-518	view protein structure

Promoters

RGD ID:

6792242

Promoter ID:

HG_KWN:21230

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell_12Hour, K562, Lymphoblastoid, NB4

Transcripts:

OTTHUMT00000133490, UC001ZSX.1, UC001ZTC.1, UC001ZTD.1, UC010BDS.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	15	41,878,451 - 41,878,951 (-)	MPROMDB

RGD ID:

6792579

Promoter ID:

HG_KWN:21232

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell_2Hour, Jurkat

Transcripts:

ENST00000299969, OTTHUMT00000133485, OTTHUMT00000133487

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	15	41,880,224 - 41,880,724 (-)	MPROMDB

RGD ID:

6792278

Promoter ID:

HG_KWN:21233

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Lymphoblastoid

Transcripts:

ENST00000396823

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	15	41,888,326 - 41,888,826 (-)	MPROMDB

RGD ID:

7229313

Promoter ID:

EPDNEW_H20403

Type:

initiation region

Name:

SERINC4_2

Description:

serine incorporator 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H20404

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	43,799,139 - 43,799,199	EPDNEW

RGD ID:

7229315

Promoter ID:

EPDNEW_H20404

Type:

initiation region

Name:

SERINC4_1

Description:

serine incorporator 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H20403

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	43,800,516 - 43,800,576	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:32237	AgrOrtholog
COSMIC	SERINC4	COSMIC
Ensembl Genes	ENSG00000184716	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENST00000299969.10	UniProtKB/TrEMBL
	ENST00000319327	ENTREZGENE
	ENST00000319327.7	UniProtKB/Swiss-Prot
	ENST00000412697.1	UniProtKB/TrEMBL
	ENST00000448553.5	UniProtKB/TrEMBL
	ENST00000457418.5	UniProtKB/TrEMBL
GTEx	ENSG00000184716	GTEx
HGNC ID	HGNC:32237	ENTREZGENE
Human Proteome Map	SERINC4	Human Proteome Map
InterPro	TDE1/TMS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	hsa:619189	UniProtKB/Swiss-Prot
NCBI Gene	619189	ENTREZGENE
OMIM	614550	OMIM
PANTHER	PTHR10383	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR10383:SF5	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Serinc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB	PA142670936	PharmGKB
UniProt	A6NH21	ENTREZGENE
	A6NM42_HUMAN	UniProtKB/TrEMBL
	B2RN41	ENTREZGENE
	F8WBD8_HUMAN	UniProtKB/TrEMBL
	H7C188_HUMAN	UniProtKB/TrEMBL
	H7C303_HUMAN	UniProtKB/TrEMBL
	Q3YL75	ENTREZGENE
	SERC4_HUMAN	UniProtKB/Swiss-Prot
UniProt Secondary	B2RN41	UniProtKB/Swiss-Prot
	Q3YL75	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar