ZSCAN29 (zinc finger and SCAN domain containing 29) - Rat Genome Database

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Gene: ZSCAN29 (zinc finger and SCAN domain containing 29) Homo sapiens
Analyze
Symbol: ZSCAN29
Name: zinc finger and SCAN domain containing 29
RGD ID: 1605867
HGNC Page HGNC:26673
Description: Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ35867; KOX31-like zinc finger protein; MGC129894; MGC129895; Zfp690; zinc finger and SCAN domain-containing protein 29; zinc finger protein 690; ZNF690
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381543,358,175 - 43,371,043 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1543,358,172 - 43,371,043 (-)EnsemblGRCh38hg38GRCh38
GRCh371543,650,373 - 43,663,241 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361541,437,662 - 41,449,550 (-)NCBINCBI36Build 36hg18NCBI36
Celera1520,421,021 - 20,432,909 (-)NCBICelera
Cytogenetic Map15q15.3NCBI
HuRef1520,498,826 - 20,510,297 (-)NCBIHuRef
CHM1_11543,769,036 - 43,780,929 (-)NCBICHM1_1
T2T-CHM13v2.01541,165,501 - 41,178,380 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12434312   PMID:12477932   PMID:14702039   PMID:15489334   PMID:16344560   PMID:21873635   PMID:22658674   PMID:26186194   PMID:28473536   PMID:28514442   PMID:29844126   PMID:30021884  
PMID:30804502   PMID:31586073   PMID:32296183   PMID:33961781   PMID:35256949  


Genomics

Comparative Map Data
ZSCAN29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381543,358,175 - 43,371,043 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1543,358,172 - 43,371,043 (-)EnsemblGRCh38hg38GRCh38
GRCh371543,650,373 - 43,663,241 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361541,437,662 - 41,449,550 (-)NCBINCBI36Build 36hg18NCBI36
Celera1520,421,021 - 20,432,909 (-)NCBICelera
Cytogenetic Map15q15.3NCBI
HuRef1520,498,826 - 20,510,297 (-)NCBIHuRef
CHM1_11543,769,036 - 43,780,929 (-)NCBICHM1_1
T2T-CHM13v2.01541,165,501 - 41,178,380 (-)NCBIT2T-CHM13v2.0
Zscan29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392120,988,754 - 121,001,623 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2120,988,754 - 121,001,606 (-)EnsemblGRCm39 Ensembl
GRCm382121,158,273 - 121,171,148 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,158,273 - 121,171,125 (-)EnsemblGRCm38mm10GRCm38
MGSCv372120,986,432 - 120,996,885 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362120,852,137 - 120,862,590 (-)NCBIMGSCv36mm8
Celera2122,312,803 - 122,323,162 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.37NCBI
Zscan29-ps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83128,589,900 - 128,594,043 (-)NCBIGRCr8
mRatBN7.23108,136,468 - 108,140,431 (-)NCBImRatBN7.2mRatBN7.2
Cytogenetic Map3q35NCBI
Zscan29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554169,921,036 - 9,933,620 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554169,921,036 - 9,933,622 (-)NCBIChiLan1.0ChiLan1.0
ZSCAN29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21632,612,752 - 32,622,522 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11536,771,934 - 36,784,254 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01522,322,316 - 22,331,662 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11540,476,956 - 40,486,653 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1540,476,956 - 40,486,653 (-)Ensemblpanpan1.1panPan2
ZSCAN29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13010,217,818 - 10,226,355 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3010,217,823 - 10,225,273 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3010,274,372 - 10,285,214 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03010,351,589 - 10,362,444 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3010,351,621 - 10,362,357 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13010,268,171 - 10,279,010 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03010,389,263 - 10,400,109 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03010,509,207 - 10,520,051 (-)NCBIUU_Cfam_GSD_1.0
Zscan29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864088,684,423 - 88,693,657 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364716,532,707 - 6,541,418 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364716,532,497 - 6,541,706 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSCAN29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1128,084,067 - 128,094,617 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11128,084,065 - 128,097,517 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21142,940,401 - 142,953,527 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZSCAN29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12639,631,076 - 39,643,281 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2639,630,611 - 39,643,756 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048101,369,933 - 101,382,822 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zscan29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480410,469,454 - 10,483,180 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480410,467,711 - 10,483,200 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZSCAN29
34 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_152455.3(ZSCAN29):c.1796G>A (p.Arg599Gln) single nucleotide variant Malignant melanoma [RCV000062863] Chr15:43361836 [GRCh38]
Chr15:43654034 [GRCh37]
Chr15:41441326 [NCBI36]
Chr15:15q15.3		 not provided
GRCh38/hg38 15q15.2-15.3(chr15:42566761-43847106)x1 copy number loss See cases [RCV000137921] Chr15:42566761..43847106 [GRCh38]
Chr15:42858959..44139304 [GRCh37]
Chr15:40646251..41926596 [NCBI36]
Chr15:15q15.2-15.3		 likely pathogenic
GRCh38/hg38 15q15.2-15.3(chr15:43298918-43558944)x3 copy number gain See cases [RCV000142782] Chr15:43298918..43558944 [GRCh38]
Chr15:43591116..43851142 [GRCh37]
Chr15:41378408..41638434 [NCBI36]
Chr15:15q15.2-15.3		 benign
NM_001372080.1(ZSCAN29):c.-516C>G single nucleotide variant not provided [RCV001548355] Chr15:43370961 [GRCh38]
Chr15:43663159 [GRCh37]
Chr15:15q15.3		 likely benign
GRCh37/hg19 15q15.2-15.3(chr15:43268878-43744411)x3 copy number gain See cases [RCV000446250] Chr15:43268878..43744411 [GRCh37]
Chr15:15q15.2-15.3		 uncertain significance
GRCh37/hg19 15q15.1-26.3(chr15:41745084-102354798)x4 copy number gain See cases [RCV000447123] Chr15:41745084..102354798 [GRCh37]
Chr15:15q15.1-26.3		 pathogenic
GRCh37/hg19 15q15.2-21.2(chr15:42850434-49592633)x1 copy number loss See cases [RCV000447035] Chr15:42850434..49592633 [GRCh37]
Chr15:15q15.2-21.2		 pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112)x3 copy number gain See cases [RCV000510717] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
GRCh37/hg19 15q15.2-15.3(chr15:43267383-43770334)x3 copy number gain See cases [RCV000448124] Chr15:43267383..43770334 [GRCh37]
Chr15:15q15.2-15.3		 uncertain significance
GRCh37/hg19 15q11.2-26.3(chr15:20733395-102511616)x4 copy number gain See cases [RCV000447765] Chr15:20733395..102511616 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
GRCh37/hg19 15q15.1-21.2(chr15:41689327-52446981)x1 copy number loss See cases [RCV000448968] Chr15:41689327..52446981 [GRCh37]
Chr15:15q15.1-21.2		 pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112) copy number gain See cases [RCV000512019] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
NM_001372080.1(ZSCAN29):c.1750C>G (p.Gln584Glu) single nucleotide variant not specified [RCV004318062] Chr15:43361882 [GRCh38]
Chr15:43654080 [GRCh37]
Chr15:15q15.3		 uncertain significance
Single allele duplication not provided [RCV000677926] Chr15:31115047..102354857 [GRCh37]
Chr15:15q13.2-26.3		 pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20071673-102461162)x3 copy number gain not provided [RCV000751156] Chr15:20071673..102461162 [GRCh37]
Chr15:15q11.1-26.3		 pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20016811-102493540)x3 copy number gain not provided [RCV000751155] Chr15:20016811..102493540 [GRCh37]
Chr15:15q11.1-26.3		 pathogenic
GRCh37/hg19 15q15.2-15.3(chr15:43062580-43744411)x1 copy number loss not provided [RCV000849506] Chr15:43062580..43744411 [GRCh37]
Chr15:15q15.2-15.3		 uncertain significance
GRCh37/hg19 15q15.2-15.3(chr15:43062580-43737484)x1 copy number loss not provided [RCV000848497] Chr15:43062580..43737484 [GRCh37]
Chr15:15q15.2-15.3		 uncertain significance
GRCh37/hg19 15q15.2-15.3(chr15:43118272-43668969)x3 copy number gain not provided [RCV000848182] Chr15:43118272..43668969 [GRCh37]
Chr15:15q15.2-15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.-560CCGGGG[9] microsatellite not provided [RCV001560761] Chr15:43370975..43370976 [GRCh38]
Chr15:43663173..43663174 [GRCh37]
Chr15:15q15.3		 likely benign
NM_001372080.1(ZSCAN29):c.-560CCGGGG[6] microsatellite not provided [RCV001636013] Chr15:43370975..43370976 [GRCh38]
Chr15:43663173..43663174 [GRCh37]
Chr15:15q15.3		 benign
NM_001372080.1(ZSCAN29):c.-560CCGGGG[4] microsatellite not provided [RCV001641055] Chr15:43370976..43370981 [GRCh38]
Chr15:43663174..43663179 [GRCh37]
Chr15:15q15.3		 benign
NM_001372080.1(ZSCAN29):c.-567T>C single nucleotide variant not provided [RCV001559395] Chr15:43371012 [GRCh38]
Chr15:43663210 [GRCh37]
Chr15:15q15.3		 likely benign
NM_001372080.1(ZSCAN29):c.-560CCGGGG[10] microsatellite not provided [RCV001576258] Chr15:43370975..43370976 [GRCh38]
Chr15:43663173..43663174 [GRCh37]
Chr15:15q15.3		 likely benign
NM_001372080.1(ZSCAN29):c.-560CCGGGG[7] microsatellite not provided [RCV001641553] Chr15:43370975..43370976 [GRCh38]
Chr15:43663173..43663174 [GRCh37]
Chr15:15q15.3		 benign
GRCh37/hg19 15q15.2-15.3(chr15:43420601-44198616)x3 copy number gain not provided [RCV001006684] Chr15:43420601..44198616 [GRCh37]
Chr15:15q15.2-15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.2508C>T (p.His836=) single nucleotide variant not provided [RCV001616478] Chr15:43361124 [GRCh38]
Chr15:43653322 [GRCh37]
Chr15:15q15.3		 benign
GRCh37/hg19 15q15.2-15.3(chr15:43017718-43685171)x3 copy number gain not provided [RCV001006682] Chr15:43017718..43685171 [GRCh37]
Chr15:15q15.2-15.3		 uncertain significance
GRCh37/hg19 15q15.2-15.3(chr15:43135272-43744542)x1 copy number loss not provided [RCV001259209] Chr15:43135272..43744542 [GRCh37]
Chr15:15q15.2-15.3		 likely pathogenic
NC_000015.9:g.(?_32964879)_(91358519_?)dup duplication Bloom syndrome [RCV001343104]|Familial colorectal cancer [RCV001325176] Chr15:32964879..91358519 [GRCh37]
Chr15:15q13.3-26.1		 uncertain significance
GRCh37/hg19 15q15.2-15.3(chr15:43268878-43744411) copy number gain not specified [RCV002052467] Chr15:43268878..43744411 [GRCh37]
Chr15:15q15.2-15.3		 uncertain significance
GRCh37/hg19 15q15.2-21.2(chr15:42850434-49592633) copy number loss not specified [RCV002052466] Chr15:42850434..49592633 [GRCh37]
Chr15:15q15.2-21.2		 pathogenic
GRCh37/hg19 15q15.2-15.3(chr15:43215243-44632384)x1 copy number loss not provided [RCV001829144] Chr15:43215243..44632384 [GRCh37]
Chr15:15q15.2-15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.2090G>A (p.Arg697Gln) single nucleotide variant not specified [RCV004333098] Chr15:43361542 [GRCh38]
Chr15:43653740 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.371C>T (p.Pro124Leu) single nucleotide variant not specified [RCV004159075] Chr15:43369075 [GRCh38]
Chr15:43661273 [GRCh37]
Chr15:15q15.3		 likely benign
NM_001372080.1(ZSCAN29):c.1761G>T (p.Arg587Ser) single nucleotide variant not specified [RCV004189822] Chr15:43361871 [GRCh38]
Chr15:43654069 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1663G>A (p.Ala555Thr) single nucleotide variant not specified [RCV004172735] Chr15:43363942 [GRCh38]
Chr15:43656140 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.2065C>T (p.Arg689Trp) single nucleotide variant not specified [RCV004197391] Chr15:43361567 [GRCh38]
Chr15:43653765 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.149A>G (p.Glu50Gly) single nucleotide variant not specified [RCV004197362] Chr15:43369765 [GRCh38]
Chr15:43661963 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1892C>T (p.Pro631Leu) single nucleotide variant not specified [RCV004230227] Chr15:43361740 [GRCh38]
Chr15:43653938 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.2147G>A (p.Arg716His) single nucleotide variant not specified [RCV004230717] Chr15:43361485 [GRCh38]
Chr15:43653683 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1832G>A (p.Cys611Tyr) single nucleotide variant not specified [RCV004178022] Chr15:43361800 [GRCh38]
Chr15:43653998 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.929G>A (p.Arg310Gln) single nucleotide variant not specified [RCV004235683] Chr15:43366403 [GRCh38]
Chr15:43658601 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1788A>C (p.Lys596Asn) single nucleotide variant not specified [RCV004184441] Chr15:43361844 [GRCh38]
Chr15:43654042 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1951T>C (p.Tyr651His) single nucleotide variant not specified [RCV004159265] Chr15:43361681 [GRCh38]
Chr15:43653879 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.2215T>C (p.Cys739Arg) single nucleotide variant not specified [RCV004237336] Chr15:43361417 [GRCh38]
Chr15:43653615 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.925T>C (p.Tyr309His) single nucleotide variant not specified [RCV004160202] Chr15:43366407 [GRCh38]
Chr15:43658605 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.389T>C (p.Leu130Ser) single nucleotide variant not specified [RCV004111578] Chr15:43369057 [GRCh38]
Chr15:43661255 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1726A>C (p.Lys576Gln) single nucleotide variant not specified [RCV004146356] Chr15:43361906 [GRCh38]
Chr15:43654104 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.775A>G (p.Ile259Val) single nucleotide variant not specified [RCV004191665] Chr15:43366557 [GRCh38]
Chr15:43658755 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.806T>C (p.Leu269Pro) single nucleotide variant not specified [RCV004202068] Chr15:43366526 [GRCh38]
Chr15:43658724 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.2381A>C (p.Asp794Ala) single nucleotide variant not specified [RCV004162806] Chr15:43361251 [GRCh38]
Chr15:43653449 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.2284T>C (p.Tyr762His) single nucleotide variant not specified [RCV004228017] Chr15:43361348 [GRCh38]
Chr15:43653546 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1886C>G (p.Thr629Arg) single nucleotide variant not specified [RCV004136467] Chr15:43361746 [GRCh38]
Chr15:43653944 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.441G>C (p.Lys147Asn) single nucleotide variant not specified [RCV004256472] Chr15:43369005 [GRCh38]
Chr15:43661203 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.2066G>A (p.Arg689Gln) single nucleotide variant not specified [RCV004260027] Chr15:43361566 [GRCh38]
Chr15:43653764 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1586C>G (p.Ala529Gly) single nucleotide variant not specified [RCV004260354] Chr15:43364019 [GRCh38]
Chr15:43656217 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.604G>A (p.Glu202Lys) single nucleotide variant not specified [RCV004314284] Chr15:43366728 [GRCh38]
Chr15:43658926 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1748T>C (p.Val583Ala) single nucleotide variant not specified [RCV004342460] Chr15:43361884 [GRCh38]
Chr15:43654082 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1558G>A (p.Ala520Thr) single nucleotide variant not specified [RCV004349283] Chr15:43364047 [GRCh38]
Chr15:43656245 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.2453A>G (p.Tyr818Cys) single nucleotide variant not specified [RCV004359095] Chr15:43361179 [GRCh38]
Chr15:43653377 [GRCh37]
Chr15:15q15.3		 uncertain significance
Single allele deletion not provided [RCV003448697] Chr15:41321409..51718601 [GRCh37]
Chr15:15q15.1-21.2		 pathogenic
GRCh37/hg19 15q11.2-21.2(chr15:22770421-50347130)x3 copy number gain not specified [RCV003987108] Chr15:22770421..50347130 [GRCh37]
Chr15:15q11.2-21.2		 pathogenic
NM_001372080.1(ZSCAN29):c.1002G>C (p.Gln334His) single nucleotide variant not specified [RCV004487768] Chr15:43366330 [GRCh38]
Chr15:43658528 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1760G>C (p.Arg587Thr) single nucleotide variant not specified [RCV004487774] Chr15:43361872 [GRCh38]
Chr15:43654070 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1944G>C (p.Glu648Asp) single nucleotide variant not specified [RCV004487778] Chr15:43361688 [GRCh38]
Chr15:43653886 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.2011T>G (p.Ser671Ala) single nucleotide variant not specified [RCV004487779] Chr15:43361621 [GRCh38]
Chr15:43653819 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.2296G>C (p.Glu766Gln) single nucleotide variant not specified [RCV004487782] Chr15:43361336 [GRCh38]
Chr15:43653534 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.590T>G (p.Leu197Arg) single nucleotide variant not specified [RCV004487786] Chr15:43366742 [GRCh38]
Chr15:43658940 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.602A>T (p.Lys201Met) single nucleotide variant not specified [RCV004487787] Chr15:43366730 [GRCh38]
Chr15:43658928 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.943G>A (p.Gly315Ser) single nucleotide variant not specified [RCV004487788] Chr15:43366389 [GRCh38]
Chr15:43658587 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.2438C>T (p.Thr813Ile) single nucleotide variant not specified [RCV004487784] Chr15:43361194 [GRCh38]
Chr15:43653392 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1979T>G (p.Phe660Cys) single nucleotide variant ZSCAN29-related condition [RCV003941763] Chr15:43361653 [GRCh38]
Chr15:43653851 [GRCh37]
Chr15:15q15.3		 likely benign
NM_001372080.1(ZSCAN29):c.1820A>G (p.Asn607Ser) single nucleotide variant not specified [RCV004487777] Chr15:43361812 [GRCh38]
Chr15:43654010 [GRCh37]
Chr15:15q15.3		 likely benign
NM_001372080.1(ZSCAN29):c.2392A>T (p.Ser798Cys) single nucleotide variant not specified [RCV004487783] Chr15:43361240 [GRCh38]
Chr15:43653438 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1950C>T (p.Pro650=) single nucleotide variant ZSCAN29-related condition [RCV003956955] Chr15:43361682 [GRCh38]
Chr15:43653880 [GRCh37]
Chr15:15q15.3		 likely benign
NM_001372080.1(ZSCAN29):c.2461C>T (p.His821Tyr) single nucleotide variant not specified [RCV004487785] Chr15:43361171 [GRCh38]
Chr15:43653369 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1303T>C (p.Cys435Arg) single nucleotide variant not specified [RCV004487770] Chr15:43364302 [GRCh38]
Chr15:43656500 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1747G>A (p.Val583Ile) single nucleotide variant not specified [RCV004487773] Chr15:43361885 [GRCh38]
Chr15:43654083 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.1778C>G (p.Ser593Cys) single nucleotide variant not specified [RCV004487775] Chr15:43361854 [GRCh38]
Chr15:43654052 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.2181C>T (p.Ile727=) single nucleotide variant ZSCAN29-related condition [RCV003977299] Chr15:43361451 [GRCh38]
Chr15:43653649 [GRCh37]
Chr15:15q15.3		 benign
NM_001372080.1(ZSCAN29):c.408G>A (p.Glu136=) single nucleotide variant ZSCAN29-related condition [RCV003971423] Chr15:43369038 [GRCh38]
Chr15:43661236 [GRCh37]
Chr15:15q15.3		 likely benign
NM_001372080.1(ZSCAN29):c.2427T>C (p.His809=) single nucleotide variant ZSCAN29-related condition [RCV003923824] Chr15:43361205 [GRCh38]
Chr15:43653403 [GRCh37]
Chr15:15q15.3		 likely benign
NM_001372080.1(ZSCAN29):c.1109AGG[1] (p.Glu371del) microsatellite ZSCAN29-related condition [RCV003922210] Chr15:43366218..43366220 [GRCh38]
Chr15:43658416..43658418 [GRCh37]
Chr15:15q15.3		 benign
NM_001372080.1(ZSCAN29):c.2509G>A (p.Gly837Arg) single nucleotide variant ZSCAN29-related condition [RCV003981441]|not specified [RCV004369903] Chr15:43361123 [GRCh38]
Chr15:43653321 [GRCh37]
Chr15:15q15.3		 benign|likely benign
NM_001372080.1(ZSCAN29):c.228T>C (p.Asn76=) single nucleotide variant ZSCAN29-related condition [RCV003934564] Chr15:43369686 [GRCh38]
Chr15:43661884 [GRCh37]
Chr15:15q15.3		 likely benign
NM_001372080.1(ZSCAN29):c.1297C>T (p.Arg433Trp) single nucleotide variant not specified [RCV004487769] Chr15:43364308 [GRCh38]
Chr15:43656506 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.2198C>G (p.Pro733Arg) single nucleotide variant not specified [RCV004487781] Chr15:43361434 [GRCh38]
Chr15:43653632 [GRCh37]
Chr15:15q15.3		 uncertain significance
NM_001372080.1(ZSCAN29):c.35C>T (p.Thr12Ile) single nucleotide variant not specified [RCV004340146] Chr15:43369879 [GRCh38]
Chr15:43662077 [GRCh37]
Chr15:15q15.3		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5371
Count of miRNA genes:1169
Interacting mature miRNAs:1473
Transcripts:ENST00000396972, ENST00000396976, ENST00000561661, ENST00000562072, ENST00000563508, ENST00000566849, ENST00000568898, ENST00000570181
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH93832  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371543,650,503 - 43,650,631UniSTSGRCh37
Build 361541,437,795 - 41,437,923RGDNCBI36
Celera1520,421,154 - 20,421,282RGD
Cytogenetic Map15q15.3UniSTS
HuRef1520,498,959 - 20,499,087UniSTS
GeneMap99-GB4 RH Map15151.04UniSTS
G65667  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371543,658,696 - 43,658,899UniSTSGRCh37
Build 361541,445,988 - 41,446,191RGDNCBI36
Celera1520,429,347 - 20,429,550RGD
Cytogenetic Map15q15.3UniSTS
HuRef1520,507,061 - 20,507,264UniSTS
SGC31111  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371543,658,635 - 43,658,784UniSTSGRCh37
Build 361541,445,927 - 41,446,076RGDNCBI36
Celera1520,429,286 - 20,429,435RGD
Cytogenetic Map15q15.3UniSTS
HuRef1520,507,000 - 20,507,149UniSTS
TNG Radiation Hybrid Map1513242.0UniSTS
GeneMap99-GB4 RH Map15151.61UniSTS
Whitehead-RH Map15115.3UniSTS
NCBI RH Map15152.5UniSTS
D13S1553  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9q34.2-q34.3UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map7q33UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map3p21.1-p14.2UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map20q12UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map6p25.1UniSTS
GDB:434012  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map19q13.13UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map2q31.2-q33.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map5q21UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map17q24UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map17q25.2UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map1p21.3-p13.1UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map12p13.1UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map1q31-q41UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map6q22-q23UniSTS
Cytogenetic Map1q24-q25.3UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map1pter-q31.3UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map16p13UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map10p11.1UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map2q11.2-q12UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p21.32UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map11q12.2UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic Map1p36-p35UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map12q23UniSTS
Cytogenetic Map4q13UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic MapXq21.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map6p12.3-p11.2UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map4p16UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map14q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 863 178 673 90 932 54 916 401 987 121 1039 957 49 114 585 3
Low 1569 2736 1050 532 950 410 3439 1788 2719 297 409 651 122 1090 2203 1
Below cutoff 70 66 4 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001372080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_152455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017021949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047432187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047432188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054377352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054377353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001751103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC018924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF525399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK093186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK093377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK098289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC109270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC109271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB183454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB365228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000396972   ⟹   ENSP00000380170
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1543,361,018 - 43,370,062 (-)Ensembl
RefSeq Acc Id: ENST00000396976   ⟹   ENSP00000380174
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1543,358,172 - 43,370,048 (-)Ensembl
RefSeq Acc Id: ENST00000561661   ⟹   ENSP00000458119
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1543,369,851 - 43,371,025 (-)Ensembl
RefSeq Acc Id: ENST00000562072   ⟹   ENSP00000456089
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1543,361,073 - 43,369,910 (-)Ensembl
RefSeq Acc Id: ENST00000563508
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1543,369,998 - 43,370,907 (-)Ensembl
RefSeq Acc Id: ENST00000566849   ⟹   ENSP00000457835
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1543,361,018 - 43,370,062 (-)Ensembl
RefSeq Acc Id: ENST00000568898   ⟹   ENSP00000456883
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1543,361,073 - 43,369,910 (-)Ensembl
RefSeq Acc Id: ENST00000570181   ⟹   ENSP00000454548
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1543,363,749 - 43,369,676 (-)Ensembl
RefSeq Acc Id: ENST00000684362   ⟹   ENSP00000507363
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1543,358,175 - 43,371,043 (-)Ensembl
RefSeq Acc Id: NM_001372080   ⟹   NP_001359009
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381543,358,175 - 43,371,043 (-)NCBI
T2T-CHM13v2.01541,165,501 - 41,178,380 (-)NCBI
Sequence:
RefSeq Acc Id: NM_152455   ⟹   NP_689668
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381543,358,175 - 43,370,062 (-)NCBI
GRCh371543,650,370 - 43,663,226 (-)NCBI
Build 361541,437,662 - 41,449,550 (-)NCBI Archive
Celera1520,421,021 - 20,432,909 (-)RGD
HuRef1520,498,826 - 20,510,297 (-)ENTREZGENE
CHM1_11543,769,036 - 43,780,929 (-)NCBI
T2T-CHM13v2.01541,165,501 - 41,177,387 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047432187   ⟹   XP_047288143
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381543,358,175 - 43,371,043 (-)NCBI
RefSeq Acc Id: XM_047432188   ⟹   XP_047288144
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381543,358,175 - 43,370,062 (-)NCBI
RefSeq Acc Id: XM_054377352   ⟹   XP_054233327
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01541,165,501 - 41,178,380 (-)NCBI
RefSeq Acc Id: XM_054377353   ⟹   XP_054233328
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01541,165,501 - 41,177,387 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_689668   ⟸   NM_152455
- UniProtKB: Q32M76 (UniProtKB/Swiss-Prot),   Q32M75 (UniProtKB/Swiss-Prot),   B3KVB9 (UniProtKB/Swiss-Prot),   Q8NA40 (UniProtKB/Swiss-Prot),   Q8IWY8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001359009   ⟸   NM_001372080
- UniProtKB: Q8IWY8 (UniProtKB/Swiss-Prot),   Q32M76 (UniProtKB/Swiss-Prot),   Q32M75 (UniProtKB/Swiss-Prot),   B3KVB9 (UniProtKB/Swiss-Prot),   Q8NA40 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSP00000454548   ⟸   ENST00000570181
RefSeq Acc Id: ENSP00000458119   ⟸   ENST00000561661
RefSeq Acc Id: ENSP00000456089   ⟸   ENST00000562072
RefSeq Acc Id: ENSP00000457835   ⟸   ENST00000566849
RefSeq Acc Id: ENSP00000380174   ⟸   ENST00000396976
RefSeq Acc Id: ENSP00000380170   ⟸   ENST00000396972
RefSeq Acc Id: ENSP00000456883   ⟸   ENST00000568898
RefSeq Acc Id: ENSP00000507363   ⟸   ENST00000684362
RefSeq Acc Id: XP_047288143   ⟸   XM_047432187
- Peptide Label: isoform X1
- UniProtKB: Q8IWY8 (UniProtKB/Swiss-Prot),   Q32M76 (UniProtKB/Swiss-Prot),   Q32M75 (UniProtKB/Swiss-Prot),   B3KVB9 (UniProtKB/Swiss-Prot),   Q8NA40 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047288144   ⟸   XM_047432188
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054233327   ⟸   XM_054377352
- Peptide Label: isoform X1
- UniProtKB: Q8NA40 (UniProtKB/Swiss-Prot),   Q8IWY8 (UniProtKB/Swiss-Prot),   Q32M76 (UniProtKB/Swiss-Prot),   Q32M75 (UniProtKB/Swiss-Prot),   B3KVB9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054233328   ⟸   XM_054377353
- Peptide Label: isoform X2
Protein Domains
C2H2-type   Myb/SANT-like DNA-binding   SCAN box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8IWY8-F1-model_v2 AlphaFold Q8IWY8 1-852 view protein structure

Promoters
RGD ID:6792252
Promoter ID:HG_KWN:21174
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Jurkat,   Lymphoblastoid
Transcripts:ENST00000396972,   NM_152455,   UC001ZRJ.1,   UC001ZRL.1,   UC001ZRM.2,   UC010BDF.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361541,448,711 - 41,450,542 (-)MPROMDB
RGD ID:7229281
Promoter ID:EPDNEW_H20386
Type:initiation region
Name:ZSCAN29_2
Description:zinc finger and SCAN domain containing 29
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H20387  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381543,370,046 - 43,370,106EPDNEW
RGD ID:7229283
Promoter ID:EPDNEW_H20387
Type:initiation region
Name:ZSCAN29_1
Description:zinc finger and SCAN domain containing 29
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H20386  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381543,371,043 - 43,371,103EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:26673 AgrOrtholog
COSMIC ZSCAN29 COSMIC
Ensembl Genes ENSG00000140265 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000396976 ENTREZGENE
  ENST00000396976.6 UniProtKB/Swiss-Prot
  ENST00000562072.5 UniProtKB/TrEMBL
  ENST00000566849.5 UniProtKB/TrEMBL
  ENST00000568898.5 UniProtKB/TrEMBL
  ENST00000570181.2 UniProtKB/TrEMBL
  ENST00000684362 ENTREZGENE
  ENST00000684362.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.4020.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000140265 GTEx
HGNC ID HGNC:26673 ENTREZGENE
Human Proteome Map ZSCAN29 Human Proteome Map
InterPro Myb_DNA-bind_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:146050 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 146050 ENTREZGENE
PANTHER HEAT SHOCK 70 KDA PROTEIN 14 UniProtKB/TrEMBL
  PROTEIN ZBED8-RELATED UniProtKB/TrEMBL
  RUMBA ZINC FINGER PROTEIN-RELATED UniProtKB/Swiss-Prot
  ZINC FINGER AND SCAN DOMAIN CONTAINING 29 UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN CONTAINING 29 UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING PROTEIN 29 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/Swiss-Prot
Pfam Myb_DNA-bind_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA162411015 PharmGKB
PROSITE SCAN_BOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SCAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0C4DGM2_HUMAN UniProtKB/TrEMBL
  B3KVB9 ENTREZGENE
  C9K0J8_HUMAN UniProtKB/TrEMBL
  H3BMU4_HUMAN UniProtKB/TrEMBL
  H3BUW4_HUMAN UniProtKB/TrEMBL
  Q05BJ4_HUMAN UniProtKB/TrEMBL
  Q32M75 ENTREZGENE
  Q32M76 ENTREZGENE
  Q8IWY8 ENTREZGENE
  Q8NA40 ENTREZGENE
  Q96AG1_HUMAN UniProtKB/TrEMBL
  ZSC29_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B3KVB9 UniProtKB/Swiss-Prot
  Q32M75 UniProtKB/Swiss-Prot
  Q32M76 UniProtKB/Swiss-Prot
  Q8NA40 UniProtKB/Swiss-Prot