PRPF38B (pre-mRNA processing factor 38B) - Rat Genome Database

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Gene: PRPF38B (pre-mRNA processing factor 38B) Homo sapiens
Analyze
Symbol: PRPF38B
Name: pre-mRNA processing factor 38B
RGD ID: 1605670
HGNC Page HGNC:25512
Description: Enables RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of precatalytic spliceosome.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ10330; MGC163218; MGC41809; NET1; pre-mRNA-splicing factor 38B; PRP38 pre-mRNA processing factor 38 domain containing B; RP11-293A10.1; sarcoma antigen NY-SAR-27
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381108,692,310 - 108,702,928 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1108,692,310 - 108,702,928 (+)EnsemblGRCh38hg38GRCh38
GRCh371109,234,932 - 109,245,550 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,036,661 - 109,045,686 (+)NCBINCBI36Build 36hg18NCBI36
Celera1107,504,760 - 107,514,241 (+)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1107,127,792 - 107,137,273 (+)NCBIHuRef
CHM1_11109,349,793 - 109,359,274 (+)NCBICHM1_1
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
RNA binding  (HDA)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Autism  (IAGP)
High myopia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12601173   PMID:14702039   PMID:15302935   PMID:15324660   PMID:15342556   PMID:16083285   PMID:16344560   PMID:17353931   PMID:19460752   PMID:19615732   PMID:21873635  
PMID:22658674   PMID:23537643   PMID:24981860   PMID:26167880   PMID:26186194   PMID:26344197   PMID:26496610   PMID:26549023   PMID:26638075   PMID:26687479   PMID:26760575   PMID:27684187  
PMID:28514442   PMID:28561026   PMID:28611215   PMID:29180619   PMID:29298432   PMID:29348822   PMID:29511261   PMID:29676528   PMID:29802200   PMID:30021884   PMID:30463901   PMID:31076518  
PMID:31343991   PMID:31365120   PMID:31527615   PMID:31586073   PMID:32416067   PMID:32694731   PMID:32807901   PMID:33545068   PMID:33916271   PMID:33961781   PMID:34133714   PMID:34185411  
PMID:34189442   PMID:34349018   PMID:34373451   PMID:35013218   PMID:35235311   PMID:35256949   PMID:35509820   PMID:35831314   PMID:35944360   PMID:36114006   PMID:36215168   PMID:36244648  
PMID:36543142   PMID:36724073   PMID:37689310   PMID:37827155   PMID:37866880   PMID:38113892  


Genomics

Comparative Map Data
PRPF38B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381108,692,310 - 108,702,928 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1108,692,310 - 108,702,928 (+)EnsemblGRCh38hg38GRCh38
GRCh371109,234,932 - 109,245,550 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,036,661 - 109,045,686 (+)NCBINCBI36Build 36hg18NCBI36
Celera1107,504,760 - 107,514,241 (+)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1107,127,792 - 107,137,273 (+)NCBIHuRef
CHM1_11109,349,793 - 109,359,274 (+)NCBICHM1_1
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBIT2T-CHM13v2.0
Prpf38b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393108,810,121 - 108,819,055 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3108,810,121 - 108,819,043 (-)EnsemblGRCm39 Ensembl
GRCm383108,902,805 - 108,911,729 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3108,902,805 - 108,911,727 (-)EnsemblGRCm38mm10GRCm38
MGSCv373108,705,725 - 108,714,622 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363109,030,863 - 109,039,760 (-)NCBIMGSCv36mm8
Celera3111,237,740 - 111,246,664 (-)NCBICelera
Cytogenetic Map3F3NCBI
cM Map347.92NCBI
Prpf38b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82199,241,312 - 199,250,342 (-)NCBIGRCr8
mRatBN7.22196,553,224 - 196,562,271 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2196,553,225 - 196,562,250 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2204,196,221 - 204,205,249 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02202,077,695 - 202,086,719 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02196,894,754 - 196,903,778 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02211,706,245 - 211,715,271 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2211,706,228 - 211,715,311 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02231,180,383 - 231,189,409 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42204,509,110 - 204,518,135 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2189,201,471 - 189,210,495 (-)NCBICelera
Cytogenetic Map2q34NCBI
Prpf38b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543512,162,730 - 12,172,136 (+)NCBIChiLan1.0ChiLan1.0
PRPF38B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21118,606,080 - 118,617,799 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11117,765,944 - 117,774,828 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01111,066,210 - 111,075,076 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11110,232,851 - 110,242,511 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1110,233,031 - 110,242,506 (+)Ensemblpanpan1.1panPan2
PRPF38B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1643,044,322 - 43,052,622 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl642,948,236 - 43,053,027 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha645,820,463 - 45,828,975 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0643,378,039 - 43,386,561 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl643,351,764 - 43,386,746 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1643,108,363 - 43,116,878 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0643,066,832 - 43,075,350 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0643,509,602 - 43,518,117 (-)NCBIUU_Cfam_GSD_1.0
Prpf38b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505819,831,957 - 19,841,149 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936704273,282 - 281,010 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936704272,998 - 282,189 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRPF38B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4111,233,281 - 111,347,501 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14111,338,988 - 111,347,505 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24121,836,910 - 121,846,047 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRPF38B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12024,884,889 - 24,893,818 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2024,882,780 - 24,893,535 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603833,452,535 - 33,462,771 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prpf38b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247724,480,463 - 4,491,189 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247724,480,464 - 4,490,017 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PRPF38B
23 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p21.2-13.2(chr1:101618097-111703028)x1 copy number loss See cases [RCV000053879] Chr1:101618097..111703028 [GRCh38]
Chr1:102083653..112245650 [GRCh37]
Chr1:101856241..112047173 [NCBI36]
Chr1:1p21.2-13.2		 pathogenic
GRCh38/hg38 1p21.1-13.3(chr1:106074587-110144290)x1 copy number loss See cases [RCV000053881] Chr1:106074587..110144290 [GRCh38]
Chr1:106617209..110686912 [GRCh37]
Chr1:106418732..110488435 [NCBI36]
Chr1:1p21.1-13.3		 pathogenic
GRCh38/hg38 1p21.3-13.3(chr1:97410602-110670510)x1 copy number loss See cases [RCV000053877] Chr1:97410602..110670510 [GRCh38]
Chr1:97876158..111213132 [GRCh37]
Chr1:97648746..111014655 [NCBI36]
Chr1:1p21.3-13.3		 pathogenic
NM_018061.4(PRPF38B):c.1463G>A (p.Arg488Gln) single nucleotide variant not provided [RCV000122555]|not specified [RCV004019522] Chr1:108699842 [GRCh38]
Chr1:109242464 [GRCh37]
Chr1:1p13.3		 uncertain significance
GRCh38/hg38 1p21.3-13.3(chr1:97272349-108893138)x1 copy number loss See cases [RCV000135333] Chr1:97272349..108893138 [GRCh38]
Chr1:97737905..109435760 [GRCh37]
Chr1:97510493..109237283 [NCBI36]
Chr1:1p21.3-13.3		 pathogenic
GRCh38/hg38 1p21.1-12(chr1:104325484-119977655)x3 copy number gain See cases [RCV000142953] Chr1:104325484..119977655 [GRCh38]
Chr1:104868106..120471049 [GRCh37]
Chr1:104669629..120321801 [NCBI36]
Chr1:1p21.1-12		 pathogenic
GRCh38/hg38 1p21.1-13.2(chr1:105468292-112190626)x1 copy number loss See cases [RCV000142760] Chr1:105468292..112190626 [GRCh38]
Chr1:106010914..112733248 [GRCh37]
Chr1:105812437..112534771 [NCBI36]
Chr1:1p21.1-13.2		 pathogenic
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12		 likely benign
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p22.1-11.2(chr1:93837992-121343783)x3 copy number gain See cases [RCV000512354] Chr1:93837992..121343783 [GRCh37]
Chr1:1p22.1-11.2		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p22.1-13.3(chr1:94054724-111671707)x3 copy number gain not provided [RCV000749068] Chr1:94054724..111671707 [GRCh37]
Chr1:1p22.1-13.3		 pathogenic
NM_018061.4(PRPF38B):c.1066A>G (p.Arg356Gly) single nucleotide variant not specified [RCV004322352] Chr1:108699445 [GRCh38]
Chr1:109242067 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.1055G>A (p.Arg352Lys) single nucleotide variant not provided [RCV000961100] Chr1:108699434 [GRCh38]
Chr1:109242056 [GRCh37]
Chr1:1p13.3		 benign
NM_018061.4(PRPF38B):c.1322G>A (p.Ser441Asn) single nucleotide variant High myopia [RCV000785684]|not specified [RCV004027179] Chr1:108699701 [GRCh38]
Chr1:109242323 [GRCh37]
Chr1:1p13.3		 uncertain significance
Single allele deletion 1p13.3 deletion syndrome [RCV000786772] Chr1:107779092..111199205 [GRCh37]
Chr1:1p13.3		 likely pathogenic
Single allele deletion not provided [RCV000844956] Chr1:108926313..111266497 [GRCh37]
Chr1:1p13.3		 not provided
NM_018061.4(PRPF38B):c.1636G>C (p.Val546Leu) single nucleotide variant not specified [RCV004301976] Chr1:108700015 [GRCh38]
Chr1:109242637 [GRCh37]
Chr1:1p13.3		 uncertain significance
NC_000001.10:g.(?_108679275)_(111674176_?)del deletion Hereditary spastic paraplegia 63 [RCV003105726] Chr1:108679275..111674176 [GRCh37]
Chr1:1p13.3		 pathogenic
GRCh37/hg19 1p21.2-12(chr1:102021465-119737478) copy number loss Seizure [RCV001352640] Chr1:102021465..119737478 [GRCh37]
Chr1:1p21.2-12		 pathogenic
GRCh37/hg19 1p21.3-13.2(chr1:95046805-114714931) copy number loss not specified [RCV002053503] Chr1:95046805..114714931 [GRCh37]
Chr1:1p21.3-13.2		 pathogenic
GRCh37/hg19 1p13.3(chr1:108346477-110177123)x1 copy number loss not provided [RCV001827629] Chr1:108346477..110177123 [GRCh37]
Chr1:1p13.3		 uncertain significance
NC_000001.10:g.(?_108679275)_(109493059_?)del deletion not provided [RCV003122418] Chr1:108679275..109493059 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.967C>T (p.Arg323Trp) single nucleotide variant not specified [RCV004235637] Chr1:108699346 [GRCh38]
Chr1:109241968 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.1184G>A (p.Arg395Lys) single nucleotide variant not specified [RCV004100489] Chr1:108699563 [GRCh38]
Chr1:109242185 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.1108T>A (p.Tyr370Asn) single nucleotide variant not specified [RCV004139294] Chr1:108699487 [GRCh38]
Chr1:109242109 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.65C>T (p.Ala22Val) single nucleotide variant not specified [RCV004226733] Chr1:108692656 [GRCh38]
Chr1:109235278 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.1517G>A (p.Arg506His) single nucleotide variant not specified [RCV004090719] Chr1:108699896 [GRCh38]
Chr1:109242518 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.1103G>A (p.Arg368His) single nucleotide variant not specified [RCV004198607] Chr1:108699482 [GRCh38]
Chr1:109242104 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.943C>T (p.Arg315Trp) single nucleotide variant not specified [RCV004220428] Chr1:108699322 [GRCh38]
Chr1:109241944 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.1625A>T (p.Lys542Ile) single nucleotide variant not specified [RCV004148150] Chr1:108700004 [GRCh38]
Chr1:109242626 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.1543A>G (p.Ser515Gly) single nucleotide variant not specified [RCV004176489] Chr1:108699922 [GRCh38]
Chr1:109242544 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.517G>A (p.Asp173Asn) single nucleotide variant not specified [RCV004106091] Chr1:108696296 [GRCh38]
Chr1:109238918 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.1097G>A (p.Arg366Gln) single nucleotide variant not specified [RCV004277776] Chr1:108699476 [GRCh38]
Chr1:109242098 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.1621A>G (p.Asn541Asp) single nucleotide variant not specified [RCV004253930] Chr1:108700000 [GRCh38]
Chr1:109242622 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.1570C>G (p.Arg524Gly) single nucleotide variant not specified [RCV004271630] Chr1:108699949 [GRCh38]
Chr1:109242571 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.314A>G (p.Lys105Arg) single nucleotide variant not specified [RCV004279862] Chr1:108695739 [GRCh38]
Chr1:109238361 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.1107C>G (p.Asp369Glu) single nucleotide variant not specified [RCV004357980] Chr1:108699486 [GRCh38]
Chr1:109242108 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.1469A>G (p.His490Arg) single nucleotide variant not specified [RCV004361134] Chr1:108699848 [GRCh38]
Chr1:109242470 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.820A>G (p.Arg274Gly) single nucleotide variant not specified [RCV004348249] Chr1:108699199 [GRCh38]
Chr1:109241821 [GRCh37]
Chr1:1p13.3		 uncertain significance
GRCh37/hg19 1p13.3(chr1:109069332-109366802)x3 copy number gain not provided [RCV003484026] Chr1:109069332..109366802 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.1002A>T (p.Glu334Asp) single nucleotide variant not specified [RCV004507509] Chr1:108699381 [GRCh38]
Chr1:109242003 [GRCh37]
Chr1:1p13.3		 uncertain significance
NM_018061.4(PRPF38B):c.1571G>A (p.Arg524His) single nucleotide variant not specified [RCV004507510] Chr1:108699950 [GRCh38]
Chr1:109242572 [GRCh37]
Chr1:1p13.3		 uncertain significance
NC_000001.11:g.(?_103175204)_(111410059_?)del deletion Autism [RCV000754122] Chr1:103175204..111410059 [GRCh38]
Chr1:1p21.1-13.2		 likely pathogenic
GRCh37/hg19 1p13.3(chr1:108769288-109425488)x3 copy number gain not provided [RCV001258447] Chr1:108769288..109425488 [GRCh37]
Chr1:1p13.3		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2106
Count of miRNA genes:689
Interacting mature miRNAs:817
Transcripts:ENST00000370021, ENST00000370022, ENST00000370025, ENST00000467302, ENST00000485810
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-32788  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371109,243,095 - 109,243,198UniSTSGRCh37
Build 361109,044,618 - 109,044,721RGDNCBI36
Celera1107,512,911 - 107,513,014RGD
Cytogenetic Map1p13.3UniSTS
HuRef1107,135,943 - 107,136,046UniSTS
Stanford-G3 RH Map15089.0UniSTS
GeneMap99-G3 RH Map15045.0UniSTS
RH91206  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371109,243,521 - 109,243,654UniSTSGRCh37
Build 361109,045,044 - 109,045,177RGDNCBI36
Celera1107,513,337 - 107,513,470RGD
Cytogenetic Map1p13.3UniSTS
HuRef1107,136,369 - 107,136,502UniSTS
GeneMap99-GB4 RH Map1337.76UniSTS
RH79755  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371109,239,275 - 109,239,481UniSTSGRCh37
Build 361109,040,798 - 109,041,004RGDNCBI36
Celera1107,509,103 - 107,509,309RGD
Cytogenetic Map1p13.3UniSTS
HuRef1107,132,135 - 107,132,341UniSTS
AL033553  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371109,237,396 - 109,237,582UniSTSGRCh37
Build 361109,038,919 - 109,039,105RGDNCBI36
Celera1107,507,224 - 107,507,410RGD
Cytogenetic Map1p13.3UniSTS
HuRef1107,130,256 - 107,130,442UniSTS
RH125928  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371109,243,567 - 109,243,801UniSTSGRCh37
Build 361109,045,090 - 109,045,324RGDNCBI36
Celera1107,513,383 - 107,513,617RGD
HuRef1107,136,415 - 107,136,649UniSTS
RH45744  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371109,239,837 - 109,239,969UniSTSGRCh37
Build 361109,041,360 - 109,041,492RGDNCBI36
Celera1107,509,665 - 107,509,797RGD
Cytogenetic Map1p13.3UniSTS
HuRef1107,132,697 - 107,132,829UniSTS
GeneMap99-GB4 RH Map1335.41UniSTS
NCBI RH Map1832.7UniSTS
SHGC-75252  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371109,239,843 - 109,239,963UniSTSGRCh37
Build 361109,041,366 - 109,041,486RGDNCBI36
Celera1107,509,671 - 107,509,791RGD
Cytogenetic Map1p13.3UniSTS
HuRef1107,132,703 - 107,132,823UniSTS
TNG Radiation Hybrid Map159415.0UniSTS
GeneMap99-GB4 RH Map1334.29UniSTS
NCBI RH Map1832.6UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2428 2226 1644 550 1604 391 4106 1643 3083 366 1451 1607 175 1 1202 2543 5 2
Low 11 765 82 74 347 74 250 554 651 53 9 6 2 245 1
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001349757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011541687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017001597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047423900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047423902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007061357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007061358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK001192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL160171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY211915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC130346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP198449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA039951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA372902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000370021   ⟹   ENSP00000359038
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1108,692,341 - 108,701,803 (+)Ensembl
RefSeq Acc Id: ENST00000370022   ⟹   ENSP00000359039
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1108,692,324 - 108,697,504 (+)Ensembl
RefSeq Acc Id: ENST00000370025   ⟹   ENSP00000359042
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1108,692,310 - 108,702,928 (+)Ensembl
RefSeq Acc Id: ENST00000467302
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1108,692,327 - 108,697,504 (+)Ensembl
RefSeq Acc Id: ENST00000485810
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1108,697,700 - 108,699,385 (+)Ensembl
RefSeq Acc Id: NM_001349757   ⟹   NP_001336686
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,702,928 (+)NCBI
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349758   ⟹   NP_001336687
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,702,928 (+)NCBI
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349759   ⟹   NP_001336688
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,702,928 (+)NCBI
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349761   ⟹   NP_001336690
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,702,928 (+)NCBI
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349762   ⟹   NP_001336691
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,702,928 (+)NCBI
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349763   ⟹   NP_001336692
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,702,928 (+)NCBI
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349764   ⟹   NP_001336693
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,702,928 (+)NCBI
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349765   ⟹   NP_001336694
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,702,928 (+)NCBI
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349766   ⟹   NP_001336695
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,702,928 (+)NCBI
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349767   ⟹   NP_001336696
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,702,928 (+)NCBI
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349768   ⟹   NP_001336697
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,702,928 (+)NCBI
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349769   ⟹   NP_001336698
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,702,928 (+)NCBI
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349770   ⟹   NP_001336699
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,702,928 (+)NCBI
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349771   ⟹   NP_001336700
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,702,928 (+)NCBI
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBI
Sequence:
RefSeq Acc Id: NM_018061   ⟹   NP_060531
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,702,928 (+)NCBI
GRCh371109,234,932 - 109,244,425 (+)RGD
Build 361109,036,661 - 109,045,686 (+)NCBI Archive
Celera1107,504,760 - 107,514,241 (+)RGD
HuRef1107,127,792 - 107,137,273 (+)RGD
CHM1_11109,349,793 - 109,359,274 (+)NCBI
T2T-CHM13v2.01108,725,575 - 108,736,181 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011541687   ⟹   XP_011539989
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,698,763 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047423900   ⟹   XP_047279856
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,697,561 - 108,702,928 (+)NCBI
RefSeq Acc Id: XM_047423902   ⟹   XP_047279858
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,698,010 (+)NCBI
RefSeq Acc Id: XM_054337340   ⟹   XP_054193315
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01108,729,750 - 108,736,181 (+)NCBI
RefSeq Acc Id: XM_054337341   ⟹   XP_054193316
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01108,729,893 - 108,736,181 (+)NCBI
RefSeq Acc Id: XM_054337342   ⟹   XP_054193317
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01108,725,575 - 108,731,263 (+)NCBI
RefSeq Acc Id: XM_054337343   ⟹   XP_054193318
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01108,725,575 - 108,732,016 (+)NCBI
RefSeq Acc Id: XR_007061357
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,698,670 (+)NCBI
RefSeq Acc Id: XR_007061358
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,310 - 108,698,670 (+)NCBI
RefSeq Acc Id: XR_008486085
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01108,725,575 - 108,731,923 (+)NCBI
RefSeq Acc Id: XR_008486086
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01108,725,575 - 108,731,923 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001336686 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336687 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336688 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336690 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336691 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336692 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336693 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336694 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336695 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336696 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336697 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336698 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336699 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336700 (Get FASTA)   NCBI Sequence Viewer  
  NP_060531 (Get FASTA)   NCBI Sequence Viewer  
  XP_011539989 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279856 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279858 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193315 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193316 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193317 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193318 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH07757 (Get FASTA)   NCBI Sequence Viewer  
  AAH16296 (Get FASTA)   NCBI Sequence Viewer  
  AAH24275 (Get FASTA)   NCBI Sequence Viewer  
  AAH34581 (Get FASTA)   NCBI Sequence Viewer  
  AAH40127 (Get FASTA)   NCBI Sequence Viewer  
  AAH53838 (Get FASTA)   NCBI Sequence Viewer  
  AAI07802 (Get FASTA)   NCBI Sequence Viewer  
  AAI30347 (Get FASTA)   NCBI Sequence Viewer  
  AAI32964 (Get FASTA)   NCBI Sequence Viewer  
  AAO65168 (Get FASTA)   NCBI Sequence Viewer  
  BAA91546 (Get FASTA)   NCBI Sequence Viewer  
  CAH10702 (Get FASTA)   NCBI Sequence Viewer  
  EAW56327 (Get FASTA)   NCBI Sequence Viewer  
  EAW56328 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000359038
  ENSP00000359038.1
  ENSP00000359039
  ENSP00000359039.5
  ENSP00000359042
  ENSP00000359042.4
GenBank Protein Q5VTL8 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_060531   ⟸   NM_018061
- Peptide Label: isoform a
- UniProtKB: Q8IWG9 (UniProtKB/Swiss-Prot),   Q86WF3 (UniProtKB/Swiss-Prot),   Q7Z6E2 (UniProtKB/Swiss-Prot),   Q6PK39 (UniProtKB/Swiss-Prot),   Q5VTL9 (UniProtKB/Swiss-Prot),   Q32Q58 (UniProtKB/Swiss-Prot),   Q05DD6 (UniProtKB/Swiss-Prot),   Q9NW40 (UniProtKB/Swiss-Prot),   Q5VTL8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011539989   ⟸   XM_011541687
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001336687   ⟸   NM_001349758
- Peptide Label: isoform e
- Sequence:
RefSeq Acc Id: NP_001336696   ⟸   NM_001349767
- Peptide Label: isoform f
- Sequence:
RefSeq Acc Id: NP_001336690   ⟸   NM_001349761
- Peptide Label: isoform c
- Sequence:
RefSeq Acc Id: NP_001336692   ⟸   NM_001349763
- Peptide Label: isoform d
- Sequence:
RefSeq Acc Id: NP_001336699   ⟸   NM_001349770
- Peptide Label: isoform f
- Sequence:
RefSeq Acc Id: NP_001336686   ⟸   NM_001349757
- Peptide Label: isoform b
- UniProtKB: A0A0A0MRN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001336693   ⟸   NM_001349764
- Peptide Label: isoform d
- Sequence:
RefSeq Acc Id: NP_001336695   ⟸   NM_001349766
- Peptide Label: isoform f
- Sequence:
RefSeq Acc Id: NP_001336691   ⟸   NM_001349762
- Peptide Label: isoform c
- Sequence:
RefSeq Acc Id: NP_001336700   ⟸   NM_001349771
- Peptide Label: isoform f
- Sequence:
RefSeq Acc Id: NP_001336694   ⟸   NM_001349765
- Peptide Label: isoform d
- Sequence:
RefSeq Acc Id: NP_001336698   ⟸   NM_001349769
- Peptide Label: isoform f
- Sequence:
RefSeq Acc Id: NP_001336688   ⟸   NM_001349759
- Peptide Label: isoform e
- Sequence:
RefSeq Acc Id: NP_001336697   ⟸   NM_001349768
- Peptide Label: isoform f
- Sequence:
RefSeq Acc Id: ENSP00000359038   ⟸   ENST00000370021
RefSeq Acc Id: ENSP00000359039   ⟸   ENST00000370022
RefSeq Acc Id: ENSP00000359042   ⟸   ENST00000370025
RefSeq Acc Id: XP_047279858   ⟸   XM_047423902
- Peptide Label: isoform X2
RefSeq Acc Id: XP_047279856   ⟸   XM_047423900
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054193318   ⟸   XM_054337343
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054193317   ⟸   XM_054337342
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054193315   ⟸   XM_054337340
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054193316   ⟸   XM_054337341
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5VTL8-F1-model_v2 AlphaFold Q5VTL8 1-546 view protein structure

Promoters
RGD ID:6856448
Promoter ID:EPDNEW_H1389
Type:initiation region
Name:PRPF38B_1
Description:pre-mRNA processing factor 38B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,692,327 - 108,692,387EPDNEW
RGD ID:6785046
Promoter ID:HG_KWN:3931
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000370022,   ENST00000370024,   OTTHUMT00000030231,   OTTHUMT00000030233,   UC001DVW.2
Position:
Human AssemblyChrPosition (strand)Source
Build 361109,035,521 - 109,036,842 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25512 AgrOrtholog
COSMIC PRPF38B COSMIC
Ensembl Genes ENSG00000134186 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000370021 ENTREZGENE
  ENST00000370021.1 UniProtKB/TrEMBL
  ENST00000370022 ENTREZGENE
  ENST00000370022.9 UniProtKB/Swiss-Prot
  ENST00000370025 ENTREZGENE
  ENST00000370025.9 UniProtKB/Swiss-Prot
GTEx ENSG00000134186 GTEx
HGNC ID HGNC:25512 ENTREZGENE
Human Proteome Map PRPF38B Human Proteome Map
InterPro PRP38 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:55119 UniProtKB/Swiss-Prot
NCBI Gene 55119 ENTREZGENE
PANTHER PRE-MRNA-SPLICING FACTOR 38B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23142 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PRP38 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA142671126 PharmGKB
UniProt A0A0A0MRN0 ENTREZGENE, UniProtKB/TrEMBL
  PR38B_HUMAN UniProtKB/Swiss-Prot
  Q05DD6 ENTREZGENE
  Q32Q58 ENTREZGENE
  Q5VTL8 ENTREZGENE
  Q5VTL9 ENTREZGENE
  Q6PK39 ENTREZGENE
  Q7Z6E2 ENTREZGENE
  Q86WF3 ENTREZGENE
  Q8IWG9 ENTREZGENE
  Q9NW40 ENTREZGENE
UniProt Secondary Q05DD6 UniProtKB/Swiss-Prot
  Q32Q58 UniProtKB/Swiss-Prot
  Q5VTL9 UniProtKB/Swiss-Prot
  Q6PK39 UniProtKB/Swiss-Prot
  Q7Z6E2 UniProtKB/Swiss-Prot
  Q86WF3 UniProtKB/Swiss-Prot
  Q8IWG9 UniProtKB/Swiss-Prot
  Q9NW40 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-10-22 PRPF38B  pre-mRNA processing factor 38B    PRP38 pre-mRNA processing factor 38 (yeast) domain containing B  Symbol and/or name change 5135510 APPROVED