ZSCAN31 (zinc finger and SCAN domain containing 31) - Rat Genome Database

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Gene: ZSCAN31 (zinc finger and SCAN domain containing 31) Homo sapiens
Analyze
Symbol: ZSCAN31
Name: zinc finger and SCAN domain containing 31
RGD ID: 1605639
HGNC Page HGNC:14097
Description: Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PcG protein complex and transcription regulator complex.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: dJ874C20.2; FLJ23407; FLJ41286; zinc finger and SCAN domain-containing protein 31; zinc finger protein 310 pseudogene; zinc finger protein 323; ZNF20-Lp; ZNF310P; ZNF323
RGD Orthologs
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,324,737 - 28,356,271 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl628,324,693 - 28,356,271 (-)EnsemblGRCh38hg38GRCh38
GRCh37628,292,514 - 28,324,048 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,400,493 - 28,429,951 (-)NCBINCBI36Build 36hg18NCBI36
Celera629,898,957 - 29,930,489 (-)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef628,099,777 - 28,111,415 (-)NCBIHuRef
CHM1_1628,294,899 - 28,306,537 (-)NCBICHM1_1
T2T-CHM13v2.0628,196,485 - 28,227,848 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8125298   PMID:12147252   PMID:12477932   PMID:14574404   PMID:14702039   PMID:16344560   PMID:18029348   PMID:20211142   PMID:21873635   PMID:24888570   PMID:25759474   PMID:28473536  
PMID:28514442   PMID:28722770   PMID:33522098   PMID:33961781  


Genomics

Comparative Map Data
ZSCAN31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,324,737 - 28,356,271 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl628,324,693 - 28,356,271 (-)EnsemblGRCh38hg38GRCh38
GRCh37628,292,514 - 28,324,048 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,400,493 - 28,429,951 (-)NCBINCBI36Build 36hg18NCBI36
Celera629,898,957 - 29,930,489 (-)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef628,099,777 - 28,111,415 (-)NCBIHuRef
CHM1_1628,294,899 - 28,306,537 (-)NCBICHM1_1
T2T-CHM13v2.0628,196,485 - 28,227,848 (-)NCBIT2T-CHM13v2.0
Zscan31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546513,668,045 - 13,668,893 (-)NCBIChiLan1.0ChiLan1.0
ZSCAN31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,930,318 - 42,976,131 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,946,918 - 38,977,073 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0628,132,429 - 28,162,551 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,803,694 - 28,815,136 (-)NCBIpanpan1.1PanPan1.1panPan2
ZSCAN31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13525,454,984 - 25,465,762 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3525,453,942 - 25,466,468 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3525,313,125 - 25,323,882 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03525,753,442 - 25,764,191 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3525,753,719 - 25,764,648 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13525,416,598 - 25,428,423 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03525,470,629 - 25,481,369 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03526,939,784 - 26,951,614 (-)NCBIUU_Cfam_GSD_1.0
ZSCAN31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,173,457 - 22,181,192 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,173,459 - 22,181,784 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZSCAN31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366604428,019,915 - 28,047,401 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in ZSCAN31
23 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6p22.3-21.33(chr6:18120520-30767516)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|See cases [RCV000052180] Chr6:18120520..30767516 [GRCh38]
Chr6:18120751..30735293 [GRCh37]
Chr6:18228730..30843272 [NCBI36]
Chr6:6p22.3-21.33		 pathogenic
NM_001135216.1(ZSCAN31):c.77A>C (p.His26Pro) single nucleotide variant Malignant melanoma [RCV000061370] Chr6:28329607 [GRCh38]
Chr6:28297384 [GRCh37]
Chr6:28405363 [NCBI36]
Chr6:6p22.1		 not provided
NM_001135216.1(ZSCAN31):c.-96+645C>T single nucleotide variant Lung cancer [RCV000096795] Chr6:28335185 [GRCh38]
Chr6:28302962 [GRCh37]
Chr6:6p22.1		 uncertain significance
GRCh38/hg38 6p22.2-22.1(chr6:26280579-28727313)x3 copy number gain See cases [RCV000133692] Chr6:26280579..28727313 [GRCh38]
Chr6:26280807..28695090 [GRCh37]
Chr6:26388786..28803069 [NCBI36]
Chr6:6p22.2-22.1		 uncertain significance
GRCh38/hg38 6p25.2-21.33(chr6:3224310-30657190)x3 copy number gain See cases [RCV000138956] Chr6:3224310..30657190 [GRCh38]
Chr6:3224544..30624967 [GRCh37]
Chr6:3169543..30732946 [NCBI36]
Chr6:6p25.2-21.33		 pathogenic
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p22.1-21.32(chr6:28130359-32108367)x3 copy number gain not provided [RCV000745592] Chr6:28130359..32108367 [GRCh37]
Chr6:6p22.1-21.32		 uncertain significance
NM_030899.5(ZSCAN31):c.954_955del (p.Glu320fs) deletion not provided [RCV000969942] Chr6:28326432..28326433 [GRCh38]
Chr6:28294209..28294210 [GRCh37]
Chr6:6p22.1		 benign
NC_000006.11:g.28005012_31683185del deletion Megacolon [RCV001290055] Chr6:28005012..31683185 [GRCh37]
Chr6:6p22.1-21.33		 likely pathogenic
NM_030899.5(ZSCAN31):c.833G>A (p.Arg278Gln) single nucleotide variant not specified [RCV004237594] Chr6:28326554 [GRCh38]
Chr6:28294331 [GRCh37]
Chr6:6p22.1		 likely benign
NM_030899.5(ZSCAN31):c.713G>A (p.Arg238His) single nucleotide variant not specified [RCV004160518] Chr6:28326674 [GRCh38]
Chr6:28294451 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_030899.5(ZSCAN31):c.412G>A (p.Val138Met) single nucleotide variant not specified [RCV004202451] Chr6:28327503 [GRCh38]
Chr6:28295280 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_030899.5(ZSCAN31):c.311C>T (p.Pro104Leu) single nucleotide variant not specified [RCV004216075] Chr6:28329373 [GRCh38]
Chr6:28297150 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_030899.5(ZSCAN31):c.176G>A (p.Arg59Gln) single nucleotide variant not specified [RCV004196860] Chr6:28329508 [GRCh38]
Chr6:28297285 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_030899.5(ZSCAN31):c.157C>A (p.Pro53Thr) single nucleotide variant not specified [RCV004099357] Chr6:28329527 [GRCh38]
Chr6:28297304 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_030899.5(ZSCAN31):c.760C>T (p.Leu254Phe) single nucleotide variant not specified [RCV004201404] Chr6:28326627 [GRCh38]
Chr6:28294404 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_030899.5(ZSCAN31):c.449A>G (p.Gln150Arg) single nucleotide variant not specified [RCV004262016] Chr6:28327466 [GRCh38]
Chr6:28295243 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_030899.5(ZSCAN31):c.1049G>A (p.Arg350His) single nucleotide variant not specified [RCV004264925] Chr6:28326338 [GRCh38]
Chr6:28294115 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_030899.5(ZSCAN31):c.76C>T (p.His26Tyr) single nucleotide variant not specified [RCV004282693] Chr6:28329608 [GRCh38]
Chr6:28297385 [GRCh37]
Chr6:6p22.1		 likely benign
NM_030899.5(ZSCAN31):c.518A>G (p.Gln173Arg) single nucleotide variant not specified [RCV004261116] Chr6:28327397 [GRCh38]
Chr6:28295174 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_030899.5(ZSCAN31):c.1172G>A (p.Arg391Gln) single nucleotide variant not specified [RCV004487797] Chr6:28326215 [GRCh38]
Chr6:28293992 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_030899.5(ZSCAN31):c.601T>A (p.Leu201Met) single nucleotide variant not specified [RCV004487798] Chr6:28326786 [GRCh38]
Chr6:28294563 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_030899.5(ZSCAN31):c.890G>A (p.Cys297Tyr) single nucleotide variant not specified [RCV004487800] Chr6:28326497 [GRCh38]
Chr6:28294274 [GRCh37]
Chr6:6p22.1		 uncertain significance
NM_030899.5(ZSCAN31):c.859C>T (p.Arg287Trp) single nucleotide variant not specified [RCV004487799] Chr6:28326528 [GRCh38]
Chr6:28294305 [GRCh37]
Chr6:6p22.1		 uncertain significance
GRCh37/hg19 6p22.1(chr6:28296650-28369127)x1 copy number loss not provided [RCV003485508] Chr6:28296650..28369127 [GRCh37]
Chr6:6p22.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4270
Count of miRNA genes:1002
Interacting mature miRNAs:1206
Transcripts:ENST00000344279, ENST00000396838, ENST00000414429, ENST00000414431, ENST00000426434, ENST00000426756, ENST00000434036, ENST00000435857, ENST00000439158, ENST00000439628, ENST00000439636, ENST00000444081, ENST00000446222, ENST00000446474, ENST00000447021, ENST00000453745, ENST00000476001, ENST00000481934
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH93781  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37628,292,835 - 28,292,957UniSTSGRCh37
Build 36628,400,814 - 28,400,936RGDNCBI36
Celera629,899,278 - 29,899,400RGD
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map6p21.31UniSTS
HuRef628,100,098 - 28,100,220UniSTS
GeneMap99-GB4 RH Map6113.9UniSTS
RH102110  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37628,304,214 - 28,304,368UniSTSGRCh37
Build 36628,412,193 - 28,412,347RGDNCBI36
Celera629,910,657 - 29,910,811RGD
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map6p21.31UniSTS
HuRef628,111,477 - 28,111,631UniSTS
GeneMap99-GB4 RH Map6113.9UniSTS
ZNF323__4820  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37628,292,365 - 28,293,164UniSTSGRCh37
Build 36628,400,344 - 28,401,143RGDNCBI36
Celera629,898,808 - 29,899,607RGD
HuRef628,099,628 - 28,100,427UniSTS
D6S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37628,304,044 - 28,304,206UniSTSGRCh37
Build 36628,412,023 - 28,412,185RGDNCBI36
Celera629,910,487 - 29,910,649RGD
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map6p21.31UniSTS
HuRef628,111,307 - 28,111,469UniSTS
D6S2303  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37628,293,337 - 28,293,441UniSTSGRCh37
Build 36628,401,316 - 28,401,420RGDNCBI36
Celera629,899,780 - 29,899,884RGD
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map6p21.31UniSTS
HuRef628,100,600 - 28,100,704UniSTS
D6S2226  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37628,317,773 - 28,317,927UniSTSGRCh37
GRCh37628,317,780 - 28,317,927UniSTSGRCh37
Build 36628,425,759 - 28,425,906RGDNCBI36
Celera629,924,221 - 29,924,368RGD
Celera629,924,214 - 29,924,368UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map6p22.3-p22.1UniSTS
HuRef628,124,848 - 28,125,002UniSTS
HuRef628,124,855 - 28,125,002UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 204 8 264 43 7 42 12 92 152 56 526 360 7 23 7
Low 2228 2180 1455 576 1135 419 4263 2004 3519 359 925 1246 165 1180 2716 4
Below cutoff 1 773 7 3 772 4 81 97 58 4 6 5 2 1 65 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001135215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001135216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_030899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005249295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005249296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017011196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002956295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002956296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007059330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007059331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008487426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008487427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008487428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008487429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF513019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK057702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL021997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA875036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA879276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN995648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000344279   ⟹   ENSP00000345339
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,324,737 - 28,336,148 (-)Ensembl
RefSeq Acc Id: ENST00000396838   ⟹   ENSP00000380050
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,324,737 - 28,354,195 (-)Ensembl
RefSeq Acc Id: ENST00000414429   ⟹   ENSP00000390076
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,324,740 - 28,356,271 (-)Ensembl
RefSeq Acc Id: ENST00000414431   ⟹   ENSP00000407529
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,326,597 - 28,336,134 (-)Ensembl
RefSeq Acc Id: ENST00000426434   ⟹   ENSP00000398680
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,326,775 - 28,354,204 (-)Ensembl
RefSeq Acc Id: ENST00000426756   ⟹   ENSP00000406376
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,329,364 - 28,341,751 (-)Ensembl
RefSeq Acc Id: ENST00000434036   ⟹   ENSP00000416225
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,329,450 - 28,354,204 (-)Ensembl
RefSeq Acc Id: ENST00000435857   ⟹   ENSP00000391235
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,326,295 - 28,336,375 (-)Ensembl
RefSeq Acc Id: ENST00000439158   ⟹   ENSP00000413705
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,324,737 - 28,336,134 (-)Ensembl
RefSeq Acc Id: ENST00000439628   ⟹   ENSP00000392552
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,329,632 - 28,354,204 (-)Ensembl
RefSeq Acc Id: ENST00000439636   ⟹   ENSP00000412519
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,327,448 - 28,335,451 (-)Ensembl
RefSeq Acc Id: ENST00000444081   ⟹   ENSP00000415040
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,329,611 - 28,354,065 (-)Ensembl
RefSeq Acc Id: ENST00000446222   ⟹   ENSP00000411033
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,329,374 - 28,354,186 (-)Ensembl
RefSeq Acc Id: ENST00000446474   ⟹   ENSP00000402937
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,324,749 - 28,336,134 (-)Ensembl
RefSeq Acc Id: ENST00000447021   ⟹   ENSP00000416108
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,327,472 - 28,335,936 (-)Ensembl
RefSeq Acc Id: ENST00000453745   ⟹   ENSP00000389479
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,326,736 - 28,336,198 (-)Ensembl
RefSeq Acc Id: ENST00000476001
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,336,900 - 28,354,204 (-)Ensembl
RefSeq Acc Id: ENST00000481934
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,324,693 - 28,326,717 (-)Ensembl
RefSeq Acc Id: ENST00000611469   ⟹   ENSP00000480254
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,324,740 - 28,336,375 (-)Ensembl
RefSeq Acc Id: NM_001135215   ⟹   NP_001128687
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,356,271 (-)NCBI
Celera629,898,957 - 29,930,489 (-)RGD
CHM1_1628,294,899 - 28,326,433 (-)NCBI
T2T-CHM13v2.0628,196,485 - 28,227,848 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001135216   ⟹   NP_001128688
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,336,134 (-)NCBI
GRCh37628,292,514 - 28,321,972 (-)NCBI
Celera629,898,957 - 29,930,489 (-)RGD
HuRef628,099,777 - 28,111,415 (-)NCBI
CHM1_1628,294,899 - 28,306,296 (-)NCBI
T2T-CHM13v2.0628,196,485 - 28,207,885 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001243241   ⟹   NP_001230170
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,336,375 (-)NCBI
HuRef628,099,777 - 28,111,415 (-)NCBI
CHM1_1628,294,899 - 28,306,537 (-)NCBI
T2T-CHM13v2.0628,196,485 - 28,208,126 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001243242   ⟹   NP_001230171
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,336,375 (-)NCBI
GRCh37628,292,514 - 28,321,972 (-)NCBI
HuRef628,099,777 - 28,111,415 (-)NCBI
CHM1_1628,294,899 - 28,306,537 (-)NCBI
T2T-CHM13v2.0628,196,485 - 28,208,126 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001243243   ⟹   NP_001230172
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,336,134 (-)NCBI
GRCh37628,292,514 - 28,321,972 (-)NCBI
HuRef628,099,777 - 28,111,415 (-)NCBI
CHM1_1628,294,899 - 28,306,296 (-)NCBI
T2T-CHM13v2.0628,196,485 - 28,207,885 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001243244   ⟹   NP_001230173
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,336,375 (-)NCBI
HuRef628,099,777 - 28,111,415 (-)NCBI
CHM1_1628,294,899 - 28,306,537 (-)NCBI
T2T-CHM13v2.0628,196,485 - 28,208,126 (-)NCBI
Sequence:
RefSeq Acc Id: NM_030899   ⟹   NP_112161
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,336,148 (-)NCBI
GRCh37628,292,514 - 28,321,972 (-)NCBI
Build 36628,400,709 - 28,411,904 (-)NCBI Archive
Celera629,898,957 - 29,930,489 (-)RGD
HuRef628,099,777 - 28,111,415 (-)NCBI
CHM1_1628,294,899 - 28,306,537 (-)NCBI
T2T-CHM13v2.0628,196,485 - 28,207,899 (-)NCBI
Sequence:
RefSeq Acc Id: NM_145909   ⟹   NP_665916
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,354,204 (-)NCBI
Build 36628,400,493 - 28,429,951 (-)NCBI Archive
Celera629,898,957 - 29,930,489 (-)RGD
CHM1_1628,294,899 - 28,324,357 (-)NCBI
T2T-CHM13v2.0628,196,485 - 28,225,781 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005249295   ⟹   XP_005249352
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,353,952 (-)NCBI
GRCh37628,292,514 - 28,321,972 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005249296   ⟹   XP_005249353
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,353,952 (-)NCBI
GRCh37628,292,514 - 28,321,972 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011514808   ⟹   XP_011513110
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,353,952 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011514809   ⟹   XP_011513111
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,336,148 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011514812   ⟹   XP_011513114
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,336,134 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024446521   ⟹   XP_024302289
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,354,204 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024446522   ⟹   XP_024302290
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,353,952 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047419253   ⟹   XP_047275209
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,337,816 (-)NCBI
RefSeq Acc Id: XM_047419254   ⟹   XP_047275210
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,353,952 (-)NCBI
RefSeq Acc Id: XM_047419255   ⟹   XP_047275211
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,353,952 (-)NCBI
RefSeq Acc Id: XM_047419256   ⟹   XP_047275212
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,353,952 (-)NCBI
RefSeq Acc Id: XM_047419257   ⟹   XP_047275213
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,353,952 (-)NCBI
RefSeq Acc Id: XM_054356222   ⟹   XP_054212197
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
RefSeq Acc Id: XM_054356223   ⟹   XP_054212198
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
RefSeq Acc Id: XM_054356224   ⟹   XP_054212199
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
RefSeq Acc Id: XM_054356225   ⟹   XP_054212200
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
RefSeq Acc Id: XM_054356226   ⟹   XP_054212201
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
RefSeq Acc Id: XM_054356227   ⟹   XP_054212202
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
RefSeq Acc Id: XM_054356228   ⟹   XP_054212203
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
RefSeq Acc Id: XM_054356229   ⟹   XP_054212204
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
RefSeq Acc Id: XM_054356230   ⟹   XP_054212205
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,209,567 (-)NCBI
RefSeq Acc Id: XM_054356231   ⟹   XP_054212206
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
RefSeq Acc Id: XM_054356232   ⟹   XP_054212207
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
RefSeq Acc Id: XM_054356233   ⟹   XP_054212208
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,804 (-)NCBI
RefSeq Acc Id: XM_054356234   ⟹   XP_054212209
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
RefSeq Acc Id: XM_054356235   ⟹   XP_054212210
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
RefSeq Acc Id: XM_054356236   ⟹   XP_054212211
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
RefSeq Acc Id: XR_002956295
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,336,375 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002956296
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,336,148 (-)NCBI
Sequence:
RefSeq Acc Id: XR_007059330
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,336,375 (-)NCBI
RefSeq Acc Id: XR_007059331
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,324,737 - 28,336,148 (-)NCBI
RefSeq Acc Id: XR_008487426
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
RefSeq Acc Id: XR_008487427
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
RefSeq Acc Id: XR_008487428
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
RefSeq Acc Id: XR_008487429
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,196,485 - 28,225,529 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001128687 (Get FASTA)   NCBI Sequence Viewer  
  NP_001128688 (Get FASTA)   NCBI Sequence Viewer  
  NP_001230170 (Get FASTA)   NCBI Sequence Viewer  
  NP_001230171 (Get FASTA)   NCBI Sequence Viewer  
  NP_001230172 (Get FASTA)   NCBI Sequence Viewer  
  NP_001230173 (Get FASTA)   NCBI Sequence Viewer  
  NP_112161 (Get FASTA)   NCBI Sequence Viewer  
  NP_665916 (Get FASTA)   NCBI Sequence Viewer  
  XP_005249352 (Get FASTA)   NCBI Sequence Viewer  
  XP_005249353 (Get FASTA)   NCBI Sequence Viewer  
  XP_011513110 (Get FASTA)   NCBI Sequence Viewer  
  XP_011513111 (Get FASTA)   NCBI Sequence Viewer  
  XP_011513114 (Get FASTA)   NCBI Sequence Viewer  
  XP_024302289 (Get FASTA)   NCBI Sequence Viewer  
  XP_024302290 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275209 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275210 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275211 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275212 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275213 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212197 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212198 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212199 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212200 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212201 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212202 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212203 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212204 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212205 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212206 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212207 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212208 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212209 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212210 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212211 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH08490 (Get FASTA)   NCBI Sequence Viewer  
  AAH65241 (Get FASTA)   NCBI Sequence Viewer  
  AAM47006 (Get FASTA)   NCBI Sequence Viewer  
  BAB15643 (Get FASTA)   NCBI Sequence Viewer  
  BAB71548 (Get FASTA)   NCBI Sequence Viewer  
  BAG53016 (Get FASTA)   NCBI Sequence Viewer  
  CAD38641 (Get FASTA)   NCBI Sequence Viewer  
  EAX03152 (Get FASTA)   NCBI Sequence Viewer  
  EAX03153 (Get FASTA)   NCBI Sequence Viewer  
  EAX03154 (Get FASTA)   NCBI Sequence Viewer  
  EAX03155 (Get FASTA)   NCBI Sequence Viewer  
  EAX03156 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000345339
  ENSP00000345339.6
  ENSP00000380050
  ENSP00000380050.2
  ENSP00000389479.1
  ENSP00000390076
  ENSP00000390076.1
  ENSP00000391235
  ENSP00000391235.1
  ENSP00000392552.1
  ENSP00000398680.1
  ENSP00000402937
  ENSP00000402937.1
  ENSP00000406376.1
  ENSP00000407529.1
  ENSP00000411033.1
  ENSP00000412519.1
  ENSP00000413705
  ENSP00000413705.1
  ENSP00000415040.1
  ENSP00000416108.1
  ENSP00000416225.1
  ENSP00000480254
  ENSP00000480254.1
GenBank Protein Q96LW9 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001128687   ⟸   NM_001135215
- Peptide Label: isoform 1
- UniProtKB: Q6P178 (UniProtKB/Swiss-Prot),   Q8WWS5 (UniProtKB/Swiss-Prot),   Q96LW9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_665916   ⟸   NM_145909
- Peptide Label: isoform 1
- UniProtKB: Q6P178 (UniProtKB/Swiss-Prot),   Q8WWS5 (UniProtKB/Swiss-Prot),   Q96LW9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_112161   ⟸   NM_030899
- Peptide Label: isoform 1
- UniProtKB: Q6P178 (UniProtKB/Swiss-Prot),   Q8WWS5 (UniProtKB/Swiss-Prot),   Q96LW9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001128688   ⟸   NM_001135216
- Peptide Label: isoform 1
- UniProtKB: Q6P178 (UniProtKB/Swiss-Prot),   Q8WWS5 (UniProtKB/Swiss-Prot),   Q96LW9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001230173   ⟸   NM_001243244
- Peptide Label: isoform 2
- UniProtKB: Q96LW9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001230170   ⟸   NM_001243241
- Peptide Label: isoform 1
- UniProtKB: Q6P178 (UniProtKB/Swiss-Prot),   Q8WWS5 (UniProtKB/Swiss-Prot),   Q96LW9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001230171   ⟸   NM_001243242
- Peptide Label: isoform 2
- UniProtKB: Q96LW9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001230172   ⟸   NM_001243243
- Peptide Label: isoform 2
- UniProtKB: Q96LW9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005249353   ⟸   XM_005249296
- Peptide Label: isoform X1
- UniProtKB: Q6P178 (UniProtKB/Swiss-Prot),   Q8WWS5 (UniProtKB/Swiss-Prot),   Q96LW9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005249352   ⟸   XM_005249295
- Peptide Label: isoform X1
- UniProtKB: Q6P178 (UniProtKB/Swiss-Prot),   Q8WWS5 (UniProtKB/Swiss-Prot),   Q96LW9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011513110   ⟸   XM_011514808
- Peptide Label: isoform X1
- UniProtKB: Q6P178 (UniProtKB/Swiss-Prot),   Q8WWS5 (UniProtKB/Swiss-Prot),   Q96LW9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011513114   ⟸   XM_011514812
- Peptide Label: isoform X1
- UniProtKB: Q6P178 (UniProtKB/Swiss-Prot),   Q8WWS5 (UniProtKB/Swiss-Prot),   Q96LW9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011513111   ⟸   XM_011514809
- Peptide Label: isoform X1
- UniProtKB: Q6P178 (UniProtKB/Swiss-Prot),   Q8WWS5 (UniProtKB/Swiss-Prot),   Q96LW9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_024302290   ⟸   XM_024446522
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_024302289   ⟸   XM_024446521
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSP00000392552   ⟸   ENST00000439628
RefSeq Acc Id: ENSP00000412519   ⟸   ENST00000439636
RefSeq Acc Id: ENSP00000413705   ⟸   ENST00000439158
RefSeq Acc Id: ENSP00000398680   ⟸   ENST00000426434
RefSeq Acc Id: ENSP00000406376   ⟸   ENST00000426756
RefSeq Acc Id: ENSP00000407529   ⟸   ENST00000414431
RefSeq Acc Id: ENSP00000390076   ⟸   ENST00000414429
RefSeq Acc Id: ENSP00000389479   ⟸   ENST00000453745
RefSeq Acc Id: ENSP00000480254   ⟸   ENST00000611469
RefSeq Acc Id: ENSP00000415040   ⟸   ENST00000444081
RefSeq Acc Id: ENSP00000402937   ⟸   ENST00000446474
RefSeq Acc Id: ENSP00000411033   ⟸   ENST00000446222
RefSeq Acc Id: ENSP00000416108   ⟸   ENST00000447021
RefSeq Acc Id: ENSP00000416225   ⟸   ENST00000434036
RefSeq Acc Id: ENSP00000391235   ⟸   ENST00000435857
RefSeq Acc Id: ENSP00000380050   ⟸   ENST00000396838
RefSeq Acc Id: ENSP00000345339   ⟸   ENST00000344279
RefSeq Acc Id: XP_047275213   ⟸   XM_047419257
- Peptide Label: isoform X1
- UniProtKB: Q96LW9 (UniProtKB/Swiss-Prot),   Q6P178 (UniProtKB/Swiss-Prot),   Q8WWS5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047275211   ⟸   XM_047419255
- Peptide Label: isoform X1
- UniProtKB: Q96LW9 (UniProtKB/Swiss-Prot),   Q6P178 (UniProtKB/Swiss-Prot),   Q8WWS5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047275210   ⟸   XM_047419254
- Peptide Label: isoform X1
- UniProtKB: Q96LW9 (UniProtKB/Swiss-Prot),   Q6P178 (UniProtKB/Swiss-Prot),   Q8WWS5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047275212   ⟸   XM_047419256
- Peptide Label: isoform X1
- UniProtKB: Q96LW9 (UniProtKB/Swiss-Prot),   Q6P178 (UniProtKB/Swiss-Prot),   Q8WWS5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047275209   ⟸   XM_047419253
- Peptide Label: isoform X1
- UniProtKB: Q96LW9 (UniProtKB/Swiss-Prot),   Q6P178 (UniProtKB/Swiss-Prot),   Q8WWS5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054212208   ⟸   XM_054356233
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054212207   ⟸   XM_054356232
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054212206   ⟸   XM_054356231
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054212211   ⟸   XM_054356236
- Peptide Label: isoform X3
- UniProtKB: Q8N3P9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212202   ⟸   XM_054356227
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054212209   ⟸   XM_054356234
- Peptide Label: isoform X3
- UniProtKB: Q8N3P9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212201   ⟸   XM_054356226
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054212197   ⟸   XM_054356222
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054212210   ⟸   XM_054356235
- Peptide Label: isoform X3
- UniProtKB: Q8N3P9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212200   ⟸   XM_054356225
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054212198   ⟸   XM_054356223
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054212203   ⟸   XM_054356228
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054212199   ⟸   XM_054356224
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054212204   ⟸   XM_054356229
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054212205   ⟸   XM_054356230
- Peptide Label: isoform X1
Protein Domains
C2H2-type   SCAN box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96LW9-F1-model_v2 AlphaFold Q96LW9 1-406 view protein structure

Promoters
RGD ID:6872322
Promoter ID:EPDNEW_H9325
Type:initiation region
Name:ZSCAN31_2
Description:zinc finger and SCAN domain containing 31
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9327  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,336,148 - 28,336,208EPDNEW
RGD ID:6872326
Promoter ID:EPDNEW_H9327
Type:initiation region
Name:ZSCAN31_1
Description:zinc finger and SCAN domain containing 31
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9325  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,354,204 - 28,354,264EPDNEW
RGD ID:6805049
Promoter ID:HG_KWN:52681
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NR_024165,   OTTHUMT00000040186,   OTTHUMT00000346814,   OTTHUMT00000346815,   OTTHUMT00000346816,   OTTHUMT00000346817,   UC003NLB.1,   UC003NLC.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36628,411,386 - 28,413,117 (-)MPROMDB
RGD ID:6805048
Promoter ID:HG_KWN:52684
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:ENST00000396838,   OTTHUMT00000346807,   OTTHUMT00000346809,   OTTHUMT00000346810,   OTTHUMT00000346811,   OTTHUMT00000346812,   OTTHUMT00000346818
Position:
Human AssemblyChrPosition (strand)Source
Build 36628,429,696 - 28,430,196 (-)MPROMDB
RGD ID:6805050
Promoter ID:HG_KWN:52685
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:UC010JRA.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36628,431,696 - 28,432,196 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
COSMIC ZSCAN31 COSMIC
Ensembl Genes ENSG00000235109 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000344279 ENTREZGENE
  ENST00000344279.11 UniProtKB/Swiss-Prot
  ENST00000396838 ENTREZGENE
  ENST00000396838.6 UniProtKB/Swiss-Prot
  ENST00000414429 ENTREZGENE
  ENST00000414429.5 UniProtKB/Swiss-Prot
  ENST00000414431.1 UniProtKB/TrEMBL
  ENST00000426434.1 UniProtKB/TrEMBL
  ENST00000426756.5 UniProtKB/TrEMBL
  ENST00000434036.5 UniProtKB/TrEMBL
  ENST00000435857 ENTREZGENE
  ENST00000435857.5 UniProtKB/TrEMBL
  ENST00000439158 ENTREZGENE
  ENST00000439158.5 UniProtKB/Swiss-Prot
  ENST00000439628.5 UniProtKB/TrEMBL
  ENST00000439636.5 UniProtKB/TrEMBL
  ENST00000444081.5 UniProtKB/TrEMBL
  ENST00000446222.5 UniProtKB/TrEMBL
  ENST00000446474 ENTREZGENE
  ENST00000446474.5 UniProtKB/Swiss-Prot
  ENST00000447021.1 UniProtKB/TrEMBL
  ENST00000453745.5 UniProtKB/TrEMBL
  ENST00000611469 ENTREZGENE
  ENST00000611469.4 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.4020.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000235109 GTEx
HGNC ID HGNC:14097 ENTREZGENE
Human Proteome Map ZSCAN31 Human Proteome Map
InterPro SCAN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:64288 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 64288 ENTREZGENE
OMIM 610794 OMIM
PANTHER GENE 12845-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PROTEIN ZBED8-RELATED UniProtKB/TrEMBL
  SCAN DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  TRANSCRIPTIONAL REPRESSOR PROTEIN YY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 728-LIKE UniProtKB/TrEMBL
  ZINC FINGER PROTEIN ZIC AND GLI UniProtKB/TrEMBL
Pfam SCAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA37840 PharmGKB
PRINTS ZINCFINGER UniProtKB/TrEMBL
PROSITE SCAN_BOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SCAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B3KTA4_HUMAN UniProtKB/TrEMBL
  C9IYT1_HUMAN UniProtKB/TrEMBL
  C9J1X2_HUMAN UniProtKB/TrEMBL
  C9J423_HUMAN UniProtKB/TrEMBL
  C9J6S7_HUMAN UniProtKB/TrEMBL
  C9JAI0_HUMAN UniProtKB/TrEMBL
  C9JBH3_HUMAN UniProtKB/TrEMBL
  C9JH14_HUMAN UniProtKB/TrEMBL
  C9JHB1_HUMAN UniProtKB/TrEMBL
  C9JIC2_HUMAN UniProtKB/TrEMBL
  C9JPM5_HUMAN UniProtKB/TrEMBL
  C9JUE1_HUMAN UniProtKB/TrEMBL
  Q6P178 ENTREZGENE
  Q8N3P9 ENTREZGENE, UniProtKB/TrEMBL
  Q8WWS5 ENTREZGENE
  Q96LW9 ENTREZGENE
  Q96QL1_HUMAN UniProtKB/TrEMBL
  ZSC31_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q6P178 UniProtKB/Swiss-Prot
  Q8WWS5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-16 ZSCAN31  zinc finger and SCAN domain containing 31  ZNF323  zinc finger protein 323  Symbol and/or name change 5135510 APPROVED