OFD1P6Y (OFD1 pseudogene 6 Y-linked) - Rat Genome Database

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Gene: OFD1P6Y (OFD1 pseudogene 6 Y-linked) Homo sapiens
Analyze
Symbol: OFD1P6Y
Name: OFD1 pseudogene 6 Y-linked
RGD ID: 1605514
HGNC Page HGNC:13657
Description:
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: OFD1 pseudogene 6, Y-linked; OFD1P2; OFD1P6; OFD1PY6; OFDYP6
Related Functional Gene: OFD1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y18,673,727 - 18,738,440 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY18,674,033 - 18,738,089 (+)EnsemblGRCh38hg38GRCh38
GRCh37Y20,835,613 - 20,900,326 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y19,295,001 - 19,359,714 (+)NCBINCBI36Build 36hg18NCBI36
CeleraY6,942,464 - 6,947,378 (+)NCBICelera
Cytogenetic MapYq11.222NCBI
HuRefY14,523,003 - 14,527,925 (+)NCBIHuRef
T2T-CHM13v2.0Y19,580,196 - 19,644,916 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12815422  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:306
Count of miRNA genes:286
Interacting mature miRNAs:295
Transcripts:ENST00000451061, ENST00000538268
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
DYS207  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,851,293 - 20,851,407UniSTSGRCh37
GRCh37Y20,792,765 - 20,792,879UniSTSGRCh37
CeleraY6,923,673 - 6,923,787RGD
Cytogenetic MapYq11.22UniSTS
Cytogenetic MapYq11.221UniSTS
HuRefY14,562,942 - 14,563,056UniSTS
TNG Radiation Hybrid MapY3806.0UniSTS
DYS132  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,851,476 - 20,851,911UniSTSGRCh37
GRCh37Y20,792,261 - 20,792,696UniSTSGRCh37
CeleraY6,923,169 - 6,923,604RGD
Cytogenetic MapYq11.22UniSTS
Cytogenetic MapYq11.221UniSTS
HuRefY14,563,125 - 14,563,560UniSTS
DYS385  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,842,336 - 20,842,716UniSTSGRCh37
GRCh37Y20,801,456 - 20,801,824UniSTSGRCh37
CeleraY6,932,364 - 6,932,732RGD
Cytogenetic MapYq11.22UniSTS
HuRefY14,553,994 - 14,554,365UniSTS
HuRefY14,512,868 - 14,513,236UniSTS
SHGC-78789  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,839,741 - 20,840,016UniSTSGRCh37
CeleraY6,970,651 - 6,970,926RGD
Cytogenetic MapYq11.22UniSTS
HuRefY14,551,399 - 14,551,674UniSTS
TNG Radiation Hybrid MapY3806.0UniSTS
sY1226  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,841,800 - 20,842,117UniSTSGRCh37
CeleraY6,972,710 - 6,973,027RGD
Cytogenetic MapYq11.22UniSTS
HuRefY14,553,458 - 14,553,775UniSTS
DYS210  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,886,252 - 20,886,468UniSTSGRCh37
GRCh37Y20,757,706 - 20,757,922UniSTSGRCh37
CeleraY6,888,612 - 6,888,828RGD
Cytogenetic MapYq11.22UniSTS
Cytogenetic MapYq11.221UniSTS
HuRefY14,597,905 - 14,598,121UniSTS
TNG Radiation Hybrid MapY3806.0UniSTS
Stanford-G3 RH MapY939.0UniSTS
SHGC-13965  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,818,729 - 20,818,965UniSTSGRCh37
CeleraY6,949,637 - 6,949,873RGD
Cytogenetic MapYq11.23UniSTS
Cytogenetic MapYq11.22UniSTS
HuRefY14,530,184 - 14,530,420UniSTS
G65936  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,831,222 - 20,831,525UniSTSGRCh37
CeleraY6,962,130 - 6,962,433RGD
Cytogenetic MapYq11.22UniSTS
HuRefY14,542,798 - 14,543,101UniSTS
G66361  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,849,267 - 20,849,350UniSTSGRCh37
GRCh37Y20,794,822 - 20,794,905UniSTSGRCh37
CeleraY6,925,730 - 6,925,813RGD
Cytogenetic MapYq11.22UniSTS
HuRefY14,560,916 - 14,560,999UniSTS
G66363  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,870,340 - 20,870,414UniSTSGRCh37
GRCh37Y20,773,760 - 20,773,834UniSTSGRCh37
CeleraY6,904,666 - 6,904,740RGD
Cytogenetic MapYq11.22UniSTS
Cytogenetic MapYq11.221UniSTS
HuRefY14,581,993 - 14,582,067UniSTS
sY1951  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,891,828 - 20,892,071UniSTSGRCh37
GRCh37Y20,752,104 - 20,752,347UniSTSGRCh37
CeleraY6,883,009 - 6,883,252UniSTS
Cytogenetic MapYq11.22UniSTS
Cytogenetic MapYq11.222UniSTS
Cytogenetic MapYq11.221UniSTS
HuRefY14,603,481 - 14,603,724UniSTS
sY1983  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,889,474 - 20,890,180UniSTSGRCh37
GRCh37Y20,753,995 - 20,754,701UniSTSGRCh37
CeleraY6,884,900 - 6,885,606UniSTS
Cytogenetic MapYq11.22UniSTS
Cytogenetic MapYq11.221UniSTS
HuRefY14,601,127 - 14,601,833UniSTS
sY1950  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,896,854 - 20,897,045UniSTSGRCh37
GRCh37Y20,747,130 - 20,747,321UniSTSGRCh37
CeleraY6,878,035 - 6,878,226UniSTS
Cytogenetic MapYq11.22UniSTS
Cytogenetic MapYq11.222UniSTS
Cytogenetic MapYq11.221UniSTS
HuRefY14,608,507 - 14,608,698UniSTS
sY1967  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,890,891 - 20,891,365UniSTSGRCh37
GRCh37Y20,752,810 - 20,753,284UniSTSGRCh37
CeleraY6,883,715 - 6,884,189UniSTS
Cytogenetic MapYq11.22UniSTS
Cytogenetic MapYq11.222UniSTS
Cytogenetic MapYq11.221UniSTS
HuRefY14,602,544 - 14,603,018UniSTS
sY1968  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,888,805 - 20,888,995UniSTSGRCh37
GRCh37Y20,755,180 - 20,755,370UniSTSGRCh37
CeleraY6,886,085 - 6,886,275UniSTS
Cytogenetic MapYq11.22UniSTS
Cytogenetic MapYq11.221UniSTS
HuRefY14,600,458 - 14,600,648UniSTS
sY1969  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,887,309 - 20,887,604UniSTSGRCh37
GRCh37Y20,756,570 - 20,756,865UniSTSGRCh37
CeleraY6,887,476 - 6,887,771UniSTS
Cytogenetic MapYq11.22UniSTS
Cytogenetic MapYq11.221UniSTS
HuRefY14,598,962 - 14,599,257UniSTS
sY1982  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,890,137 - 20,890,945UniSTSGRCh37
GRCh37Y20,753,230 - 20,754,038UniSTSGRCh37
CeleraY6,884,135 - 6,884,943UniSTS
Cytogenetic MapYq11.22UniSTS
Cytogenetic MapYq11.222UniSTS
Cytogenetic MapYq11.221UniSTS
HuRefY14,601,790 - 14,602,598UniSTS
sY1984  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,888,840 - 20,889,534UniSTSGRCh37
GRCh37Y20,754,641 - 20,755,335UniSTSGRCh37
CeleraY6,885,546 - 6,886,240UniSTS
Cytogenetic MapYq11.22UniSTS
Cytogenetic MapYq11.221UniSTS
HuRefY14,600,493 - 14,601,187UniSTS
DYS206  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y20,846,071 - 20,847,261UniSTSGRCh37
GRCh37Y20,796,911 - 20,798,101UniSTSGRCh37
CeleraY6,927,819 - 6,929,009UniSTS
Cytogenetic MapYq11.22UniSTS
HuRefY14,557,720 - 14,558,910UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENST00000432335
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY18,729,882 - 18,739,197 (+)Ensembl
RefSeq Acc Id: ENST00000451061
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY18,674,033 - 18,738,089 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC OFD1P6Y COSMIC
Ensembl Genes ENSG00000242153 Ensembl, ENTREZGENE
GTEx ENSG00000242153 GTEx
HGNC ID HGNC:13657 ENTREZGENE
Human Proteome Map OFD1P6Y Human Proteome Map
NCBI Gene 386690 ENTREZGENE
PharmGKB PA134988461 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 OFD1P6Y  OFD1 pseudogene 6 Y-linked    OFD1 pseudogene 6, Y-linked  Symbol and/or name change 5135510 APPROVED
2011-07-27 OFD1P6Y  OFD1 pseudogene 6, Y-linked  OFDYP6  OFD1 pseudogene Y-linked 6  Symbol and/or name change 5135510 APPROVED