DUXAP6 (double homeobox A pseudogene 6) - Rat Genome Database

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Gene: DUXAP6 (double homeobox A pseudogene 6) Homo sapiens
Analyze
Symbol: DUXAP6
Name: double homeobox A pseudogene 6
RGD ID: 1605464
HGNC Page HGNC:32185
Description: Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the DUXA homeobox gene family. [provided by RefSeq, Jul 2008]
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: DUXA  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381592,281,443 - 92,282,474 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1592,281,484 - 92,282,084 (+)EnsemblGRCh38hg38GRCh38
GRCh371592,824,673 - 92,825,704 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361590,625,572 - 90,626,831 (+)NCBINCBI36Build 36hg18NCBI36
Celera1569,236,530 - 69,237,566 (+)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1568,961,588 - 68,962,624 (+)NCBIHuRef
CHM1_11592,665,660 - 92,666,696 (+)NCBICHM1_1
T2T-CHM13v2.01590,043,902 - 90,044,933 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:178
Count of miRNA genes:172
Interacting mature miRNAs:178
Transcripts:ENST00000553858
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 9 3 2 14 1
Below cutoff 58 62 50 11 38 10 100 47 174 6 161 67 1 18 66

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000553858
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1592,281,484 - 92,282,084 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC DUXAP6 COSMIC
Ensembl Genes ENSG00000258726 Ensembl
GTEx ENSG00000258726 GTEx
HGNC ID HGNC:32185 ENTREZGENE
Human Proteome Map DUXAP6 Human Proteome Map
NCBI Gene 503635 ENTREZGENE
PharmGKB PA142671930 PharmGKB